Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: "Huping" jujube fruit transcriptome

PROVIDER: PRJNA554164 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9674400_1.fastq.gz	Fastqsanger.gz
	SRR9674400_2.fastq.gz	Fastqsanger.gz
	SRR9674401_1.fastq.gz	Fastqsanger.gz
	SRR9674401_2.fastq.gz	Fastqsanger.gz
	SRR9674402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Comparative transcriptome analysis reveals differential transcription in heat-resistant and heat-sensitive jujube cultivars under heat stress

Project description:Jujube (Ziziphus jujuba Mill.) is an economically and agriculturally significant fruit crop and is widely cultivated throughout the world. Heat stress has recently become one of the major abiotic stresses limiting plant growth and productivity. However, there are few studies on the transcriptome profiling of jujube subjected to heat stress. In this study, we analyzed the physiological and transcriptomic changes of heat-resistant jujube cultivar ‘HR’ and heat-sensitive cultivar ‘HS’ caused by high temperature stress. We statistically determined 984, 1468, 1727 and 2098 differentially expressed genes (DEGs) between ‘HR’ and ‘HS’ after 0, 1, 3, 5 d of heat stress, respectively. Gene Ontology (GO) enrichment analysis indicated that Aa great deal of heat-responsive genes were identified in these DEGs by Gene Ontology (GO) enrichment analysis. It suggests the distinct molecular mechanism of jujube response to heat stress. Furthermore, we validated the expression profiles of 12 candidates using qRT-PCR to further confirm the accuracy of the RNA-seq data. These results will advance our knowledge of the genes involved in the complex regulatory networks of heat stress and provide genetic resources for further improving the heat tolerance in jujube.

2020-10-02 | GSE136383 | GEO

Ziziphus jujuba cultivar:Dongzao

Project description:Transcriptome sequencing of jujube fruit

| PRJNA474840 | ENA

Project description:jujube fruit sequence

| PRJNA555755 | ENA

Ziziphus

Project description:jujube fruit transcriptome sequencing raw sequence reads

| PRJNA305837 | ENA

Transcriptome analysis of a heat-resistant jujube cultivar response to high temperature stress

Project description:We found a heat-resistant jujube cultivar in our previous study, but the molecular mecanism of heat-resistantance remained investigated. In the current study, we made this seedlings of jujube cultivar to be under heat stress (45°C) for 0, 1, 3, 5 and 7 days respectively. After checking the phenotypic and physiological features, the leaf samples (HR0, HR1, HR3, HR5 and HR7) were collected accordingly. RNA-seq transcriptome comparisons were performed, showing that 2266, 4907, 6120 and 2894 differentially expressed genes (DEGs) were identified among HR1 vs. HR0, HR3 vs. HR0, HR5 vs. HR0, and HR7 vs. HR0 respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses of the DEGs from these comparisons. it revealed that a series of biological processes involved in photosynthesis, protein processing in endoplasmic reticulum and metabolism, suggesting that lowering or upregulating these processes may contribute to improved heat resistance in this jujube cultivar.

2020-10-02 | GSE136047 | GEO

Ziziphus jujuba

Project description:wild jujube Transcriptome

| PRJNA350602 | ENA

Punica granatum L. Peel LC-MS/MS

Project description:We combined an iTRAQ-based proteome-level analysis with an RNA sequencing-based transcriptome-level analysis to detect the proteins and genes related to fruit peel colour development during two fruit development stages in the ‘Tunisia’ and ‘White’ pomegranate cultivars.

2018-10-19 | PXD009129 | Pride

Simultaneous transcriptome analysis of Colletotrichum gloeosporioides and tomato fruits response reveals novel fungal-fruit arm and defense strategies

Project description:The simultaneous gene fungal-fruit expression at appressoria, quiescence and necrotrophic stages in C. gloeosporioides-tomato fruit interaction were characterized by Illumina NGS. Fungal appressoria stage on green fruit showed stage-specific transcription and was accompanied by massive fruit transcriptional defense response. The quiescent fungal transcriptome showed activation of chromatin remodeling genes while the fruit response continued a highly integrated and massive up-regulation of defense genes. The necrotrophic stage showed a dramatic shift in up-regulation of C. gloeosporioides pathogenicity factors and a susceptive fruit response that shows activation of the salicylic acid pathway culminating in cell death and anthracnose disease. Simultaneous fungal-fruit transcriptome analysis deepens our perception of the unfolding fungal-fruit arms and defenses race.

2015-03-01 | GSE55553 | GEO

Project description:jujube metagenome

| PRJNA795762 | ENA

Project description:Transcriptomics of exogenous hormones treatment on winter jujube fruit during different storage stages

| PRJNA728887 | ENA