Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Alca torda isolate:2006_11_07_Graehlm_vinge_78

ABSTRACT: Alca torda (Razorbill) genome assembly, alternate haplotype, bAlcTor1

PROVIDER: PRJNA554521 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Alca torda isolate:2006_11_07_Graehlm_vinge_78

Project description:Alca torda(Razorbill) genome assembly, primary haplotype, bAlcTor1

| PRJNA554520 | ENA

Alca torda

Project description:Alca torda

| PRJNA919606 | ENA

Project description:Alca torda (Razorbill) genome assembly

| PRJNA566188 | ENA

Alca torda

Project description:Alca torda overview

| PRJNA554726 | ENA

Citrus glauca isolate:PI 539717

Project description:Citrus glauca alternate haplotype genome assembly

| PRJNA924121 | ENA

Citrus inodora isolate:PI 539741

Project description:Citrus inodora alternate haplotype genome assembly

| PRJNA924114 | ENA

Citrus australasica isolate:CRC3672 | cultivar:Australian finger lime

Project description:Citrus australasica alternate haplotype genome assembly

| PRJNA924095 | ENA

GRCz11 Alternate Haplotype Clone Variants

Project description:The process of producing the GRC zebrafish assembly included the high-quality sequencing and finishing of clones representing alternate haplotypes to corresponding regions in the current primary assembly. This project reports the variation between those alternate haplotype clones and the primary assembly.

2017-11-18 | PRJEB22799 | EVA

CRISPR-based targeted haplotype-resolved assembly of a megabase region [EPIC]

Project description:Constructing high-quality haplotype-resolved genome assemblies has substantially improved the ability to detect and characterize genetic variants. A targeted approach providing readily access to the rich information from haplotype-resolved genome assemblies will be appealing to groups of basic researchers and medical scientists focused on specific genomic regions. Here, using the 4.5 megabase, notoriously difficult-to-assemble major histocompatibility complex (MHC) region as an example, we demonstrated an approach to construct haplotype-resolved assembly of the targeted genomic region with the CRISPR-based enrichment. Compared to the results from haplotype-resolved genome assembly, our targeted approach achieved comparable completeness and accuracy with reduced computing complexity, sequencing cost, as well as the amount of starting materials. Moreover, using the targeted assembled personal MHC haplotypes as the reference both improves the quantification accuracy for sequencing data and enables allele-specific functional genomics analyses of the MHC region. Given its highly efficient use of resources, our approach can greatly facilitate population genetic studies of targeted regions, and may pave a new way to elucidate the molecular mechanisms in disease etiology.

2022-11-15 | GSE192501 | GEO

CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS]

2022-11-15 | GSE192499 | GEO