Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Facilitates Quantitative Analysis of NC and miR-200ba KD Mice MOE Transcriptomes

ABSTRACT: Next Generation Sequencing Facilitates Quantitative Analysis of NC and miR-200ba KD Mice MOE Transcriptomes

PROVIDER: PRJNA555573 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9717200_1.fastq.gz	Fastqsanger.gz
	SRR9717200_2.fastq.gz	Fastqsanger.gz
	SRR9717195_1.fastq.gz	Fastqsanger.gz
	SRR9717195_2.fastq.gz	Fastqsanger.gz
	SRR9717196_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Next Generation Sequencing Facilitates Quantitative Analysis of NC and miR-200ba KD Mice MOE Transcriptomes

Project description:In order to explore the underlying molecular mechanisms of the impaired olfactory behaviors demonstrated in mice with knockdown of miR-200b/a in the MOE, we dissected the MOE tissues of the miR-200b/a knockdown mice and their NC controls for RNA transcriptome analysis.

2020-07-01 | GSE134554 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of NC and shMETTL14 Transcriptomes

Project description:The goals of this study are to compare the differentially expressed genes between NC and shMETTL14 groups

2022-07-20 | GSE173520 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of NC and shMETTL14 Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of NC and shMETTL14 Transcriptomes

| PRJNA725882 | ENA

RNA sequencing facilitates quantitative analysis of U251-NC and U251-COL8A1 transcriptomes

Project description:RNA sequencing facilitates quantitative analysis of U251-NC and U251-COL8A1 transcriptomes

| PRJNA1033575 | ENA

RNA sequencing facilitates quantitative analysis of U118-NC and U118-SPNS2 transcriptomes

Project description:RNA sequencing facilitates quantitative analysis of U118-NC and U118-SPNS2 transcriptomes

| PRJNA994559 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of sh-NC and sh-Etv5 macrophage line Raw264.7 Transcriptomes

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare sh-NC with sh-Etv5 macrophage line Raw264.7 transcriptome profiling (RNA-seq).

2022-02-06 | GSE166294 | GEO

Gene expression in the hTSCs of si-NC and si-PR-SET7 KD hTSCs

Project description:To detect the gene profiles in si-NC and si-PR-SET7 KD hTSCs, hTSCs are collected and subjected to RNA-Seq. After aligned to mouse hg38 by HISAT2, RPKM value was calculated by Edger. Our results show that PR-SET7 as the key regulator for hTSCs. There are also some genes differentially expressed after PR-SET7 KD, some of the DEGs were further confirmed by qPCR, the DEGs were associated with viral mimic inflammatory activities, antiviral innate immune response, genomic instability, and programmed cell death, indicating the essential role of PR-SET7. This RNA-Seq data provides fundamental information for our further physiological study of PR-SET7.

2023-06-28 | GSE196223 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of si-nc and si-SRSF11 LOVO Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of si-nc and si-SRSF11 LOVO Transcriptomes

| PRJNA818336 | ENA

Expression data from ribosomal protein (RP) L23 (RPL23)-KD and NC SKM-1 cells.

Project description:Ribosomal protein (RP) L23 is a negative regulator of cell apoptosis. RPL23 overexpression is associated with abnormal apoptotic resistance in CD34+ cells derived from patients with higher-risk myelodysplastic syndrome (MDS). However, the mechanism underlying RPL23-induced apoptotic resistance in higher-risk MDS patients is poorly understood. Gene microarray analysis between RPL23-knockdown (RPL23-KD) and matched control cells (RPL23-NC) was performed to detail global gene expression profiles and to identify differentially expressed genes and potentially involved pathways associated with RPL23 knockdown.

2017-02-25 | GSE95348 | GEO

Next Generation Sequencing Quantitative Analysis of Wild Type and TMEM9 KD Transcriptomes

Project description:Purpose: The goals of this study are to check signaling pathway change upon TMEM9 KD using NGS-derived retinal transcriptome profiling (RNA-seq). Methods: Retinal mRNA profiles of MDA-MB-453 WT and TMEM9 KD were generated by deep sequencing, using Illumina. The sequence reads that passed quality filters were analyzed. Results: Using GSEA analysis, we found mTOR signaling pathway was suppressed after TMEM9 KD. Conclusions: Our study revealed the signaling pathway change upon TMEM9 KD in BRCA cells.

2023-03-03 | GSE197959 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data