Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sponge microbiome

ABSTRACT: Sponge microbiome Raw sequence reads

PROVIDER: PRJNA555824 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9996300_1.fastq.gz	Fastqsanger.gz
	SRR9996300_2.fastq.gz	Fastqsanger.gz
	SRR9996301_1.fastq.gz	Fastqsanger.gz
	SRR9996301_2.fastq.gz	Fastqsanger.gz
	SRR9996302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Complete metabolic reconstruction of the microbiome of the model sponge Ianthella basta

Project description:Marine sponges are essential for coral reefs to thrive and harbour a diverse microbiome that is thought to contribute to host health. Although the overall function of sponge symbionts has been increasingly described, in-depth characterisation of each taxa remains challenging, with many sponge species hosting up to 3,000 distinct microbial species. Recently, the sponge Ianthella basta has emerged as a model organism for symbiosis research, hosting only three dominant symbionts: a Thaumarchaeotum, a Gammaproteobacterium, and an Alphaproteobacterium and a range of other minor taxa. Here, we retrieved metagenome assembled genomes (MAGs) for >90% of I. basta’s microbial community which allowed us to make a complete metabolic reconstruction of the sponge’s microbiome, identifying metabolic complementarity between microbes, as well as the importance of symbionts present in low abundance. We also mined the metagenomes for putative viral sequences, highlighting the contribution of viruses to the overall metabolism of the sponge, and complement this data with metaproteomic sequencing to identify active metabolic pathways in both prokaryotes and viruses. This data now allows us to use I. basta as a model organism for studying host-microbe interactions and provides a basis for future (genomic) manipulative experiments.

2023-02-24 | PXD032278 | Pride

sponge metagenome

Project description:Sponge Raw sequence reads

| PRJNA315365 | ENA

sponge metagenome

Project description:sponge Raw sequence reads

| PRJNA377393 | ENA

sponge metagenome

Project description:sponge metagenome Raw sequence reads

| PRJNA928502 | ENA

sponge metagenome

Project description:sponge metagenome Raw sequence reads