Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single Cell RNASeq profiling of stromal vascular fraction from visceral adipose tissue of young individual

ABSTRACT: Single Cell RNASeq profiling of stromal vascular fraction from visceral adipose tissue of young individual

PROVIDER: PRJNA561704 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10015271.fastq.gz	Fastqsanger.gz
	SRR10015272.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Single Cell RNASeq profiling of stromal vascular fraction from visceral adipose tissue of young individual

Project description:Visceral adipose tissue (VAT) is studied extensively to understand its involvement in development of metabolic disorders. In this experiment, we attempt to profile different cell types in VAT of a healthy young individual.

2019-11-04 | GSE136229 | GEO

Single Cell RNASeq profiling of stromal vascular fraction from Subcutaneous and visceral adipose tissue

Project description:The complex relationship between metabolic disease risk and body fat distribution in humans involves cellular characteristics which are specific to each body fat compartment. We applied single-cell RNA sequencing (scRNA-Seq) to identify these depot-specific differences in the stromal vascular fraction of visceral (VAT) and subcutaneous (SAT) adipose tissue of obese individuals. We characterized multiple immune cells, endothelial cells, fibroblasts, adipose and hematopoietic stem cell progenitors. Subpopulations of adipose-resident immune cells were found to be metabolically active and associated with metabolic disease status including a population of potential dysfunctional CD8+ T cells expressing metallothioneins. Adipocyte progenitors were identified at different stages of adipogenesis where a subset was pronounced in type 2 diabetics. Depot-specific analysis revealed a class of adipocyte progenitors unique to VAT possessing features similar to ‘inducible brown preadipocytes’. Our first generation human scRNA-Seq transcriptome atlas across fat depots provides a new resource to dissect functional genomics of metabolic disease.

2019-11-04 | GSE129363 | GEO

Single Cell RNASeq profiling of stromal vascular fraction from Subcutaneous and visceral adipose tissue

Project description:Single Cell RNASeq profiling of stromal vascular fraction from Subcutaneous and visceral adipose tissue

| PRJNA531020 | ENA

Gene expression of adipocyte and stromal-vascular fractions

Project description:In order to select mRNA transcripts strongly enriched in murine white adipocytes versus brown adipocytes or stromal-vascular fraction, gene expression data of the adipocyte and stromal-vascular fractions of the interscapular brown, inguinal subcutaneous as well as visceral epididymal adipose tissue depots of young adult male C57BL/6 mice housed at constant 23Â°C ambient temperature were obtained. 18 samples: 3 different adipose tissues separated into stromal-vascular fraction and adipocytes, analyzed in biological triplicates.

2013-04-27 | E-GEOD-44059 | biostudies-arrayexpress

Gene expression in canine adipose stromal vascular fraction

Project description:Microarray studies were performed to identify expression patterns by cryopreserved adipose stromal vascular fraction (SVF) preparations that were prepared by three different veterinary stem cell companies from the same source of canine adipose tissue.

2014-03-05 | GSE55351 | GEO

Comparison between stromal vascular fraction of adipose tissue, testis and epididymis in mouse

Project description:An experiment was performed in order to compare directly profiles of stromal vascular fraction of adipose tissue, testis and epidydimis, in order to rule out a possible contamination of the stromal vascular fraction of adipose tissue (SVF) by adjacent tissues (i.e. epididymis and testis). This led to the identification of a list of 2358 SVF-specific probes, which was subsequently used for further investigations. 3 dye-swap pairs, comparing 3 distinct samples of total RNA prepared from: (1) stromal vascular fraction of adipose tissue, (2) testis and (3) epidydimis.

2010-05-31 | E-GEOD-16613 | biostudies-arrayexpress

Gene expression of adipocyte and stromal-vascular fractions

2013-04-27 | GSE44059 | GEO

Comparison between stromal vascular fraction of adipose tissue, testis and epididymis in mouse

2010-06-01 | GSE16613 | GEO

Expression data from Mus musculus tumor stromal vascular fraction

Project description:Expression data from Mus musculus tumor stromal vascular fraction

| PRJNA898282 | ENA

Expression profile of stromal vascular fraction during would healing

Project description:Expression profile of stromal vascular fraction during would healing

| PRJNA555855 | ENA