Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome profiling of Volvariella volvacea

PROVIDER: PRJNA562321 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10040552_1.fastq.gz	Fastqsanger.gz
	SRR10040552_2.fastq.gz	Fastqsanger.gz
	SRR10040553_1.fastq.gz	Fastqsanger.gz
	SRR10040553_2.fastq.gz	Fastqsanger.gz
	SRR10040554_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Volvariella volvacea

Project description:Volvariella volvacea transcriptome

| PRJNA408191 | ENA

Volvariella volvacea

Project description:Volvariella volvacea Raw sequence reads

| PRJNA594834 | ENA

Volvariella volvacea

Project description:Volvariella volvacea Raw sequence reads

| PRJNA1141764 | ENA

Composition and expression of genes encoding carbohydrate-active enzymes in the straw-degrading mushroom Volvariella volvacea

Project description:Volvariella volvacea is one of a few commercial cultivated mushrooms mainly using straw as carbon source. In this study, the genome of V. volcacea was sequenced and assembled. A total of 286 genes encoding carbohydrate-active enzymes (CAZymes) in V. volvacea were identified and annotated. Among 15 fungi with sequenced genomes, V. volvacea ranks the seventh in the number of genes encoding CAZymes. In addition, the composition of glycoside hydrolases in V. volcacea is dramatically different from other basidiomycetes: it is particularly rich in members of the glycoside hydrolase families GH10 (hemicellulose degradation) and GH43 (hemicellulose and pectin degradation), and the lyase families PL1, PL3 and PL4 (pectin degradation) but lacks families GH5b, GH11, GH26, GH62, GH93, GH115, GH105, GH9, GH53, GH32, GH74 and CE12. Analysis of genome-wide gene expression profiles of 3 strains using 3'-tag digital gene expression (DGE) reveals that 246 CAZyme genes were expressed even in potato destrose broth medium. Our data also showed that the formation of a heterokaryon strain could dramatically increase the expression of a number of genes which were poorly expressed in its parental homokaryon strains. Using the 3'-tag digital gene expression (DGE), we compared the gene expression profiles among 2 homokaryotic V. volvacea strains PYd15 and PYd21, and one heterokaryotic strain H1521, which is a hybrid strain of PYd15 and PYd21.

2014-12-19 | E-GEOD-43019 | biostudies-arrayexpress

Composition and expression of genes encoding carbohydrate-active enzymes in the straw-degrading mushroom Volvariella volvacea

2014-12-19 | GSE43019 | GEO

Volvariella volvacea PYd21

Project description:Volvariella volvacea PYd21 Genome sequencing and assembly

| PRJNA171553 | ENA

Volvariella volvacea WC 439

Project description:Volvariella volvacea WC 439 Genome sequencing and assembly

| PRJNA236756 | ENA

Volvariella volvacea V23 strain:V23-1

Project description:Volvariella volvacea V23 strain:V23-1 Genome sequencing and assembly

| PRJNA175251 | ENA

Volvariella volvacea

Project description:Homeobox transcription factors involved in fruiting body development of Volvariella volvacea

| PRJNA185312 | ENA

Project description:Transcriptomic profiling reveals the effect of amino acid metabolism on the production capacity of Volvariella volvacea during repeated subculture

| PRJNA1142981 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data