Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

ABSTRACT: Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

PROVIDER: PRJNA564794 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

| PRJNA579805 | ENA

Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:We compared the gene expression in roots between WT and uri mutant under +Fe and -Fe conditions using ATH1 microarray analysis to explore which genes are affected by the loss of URI function.

2019-12-06 | GSE137201 | GEO

Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:PMID: 15539473. We compared the gene expression in roots between WT and fit mutant under +Fe and -Fe conditions using ATH1 microarray analysis to explore which genes are affected by the loss of FIT function.

2019-10-28 | GSE139433 | GEO

ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

| PRJNA566137 | ENA

Expression data from roots of WT and bts-3 plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:We wanted to understand at what level BTS acts, i.e. how upstream BTS acts and if BTS misregulation affets only a subset or multiple subsets of Fe regulated genes. We studied WT and bts-3 mutant roots. Using microarray analysis, we demonstrated that bts-3 has a consitutitive expression of Fe deficiency response in root.

2019-01-01 | GSE71875 | GEO

ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:We compared the URI binding to the chromosome in roots between +Fe and -Fe conditions.

2019-12-06 | GSE137645 | GEO

iTRAQ analyses of Fe-sufficient and Fe-deficient non-transformant and HRZ-knockdown rice roots

Project description:We conducted iTRAQ analyses using soluble proteins extracted from roots of non-transformant rice (NT) and previously generated HRZ-knockdown (HRZi) lines (Kobayashi et al., 2013 Nat Commun 4: 2792) cultivated under Fe-sufficient and Fe-deficient conditions. We identified and quantified 3,033 and 3,525 proteins in replicate 1 and 2, respectively, which totaled 4,884 proteins including 1,698 overlapping proteins between the two replicate experiments.

2022-04-08 | PXD026597 | Pride

Transcriptomic changes in maize roots in response to Fe deficiency

Project description:Iron deficiency is a yield-limiting factor and a worldwide problem for crop production in many agricultural regions, particularly in aerobic and calcareous soils. Graminaceous species, like maize, improve Fe acquisition through the release of phytosiderophores (PS) into the rhizosphere and the following uptake of Fe(III)-PS complexes through specific transporters. Transcriptional profile obtained by roots 12-d-old maize plants under Fe starvation for 1 week (Fe-deficient; 19-d-old plants) were compared with the transcriptional profile obtained by roots of 12-d-old maize plants grown in a nutrient solution containing 100 μM Fe-EDTA for 1 week (Fe-sufficient; 19-d-old plants).

2017-06-12 | GSE76829 | GEO

RNA-seq analysis of Arabidopsis roots of Col-0, fls2 and UBQ10::mCitrine-IMA1 in response to +Fe, +Fe+flg22, -Fe and -Fe+flg22

Project description:We reported the flg22-triggered immune responses in roots affect the iron deficiency responses and may link to the function of FLS2 and IMA1 in the root. To identify the underlying mechanism of how the root transcriptome profiles respond to +Fe, +Fe+flg22, -Fe, -Fe+flg22 respectively, and if the flg22 responses is dependent on the function of FLS2 and IMA1 in the root, we performed an mRNA-seq experiments in Col-0, fls2 and UBQ10::mCitrine-IMA1 with different treatments. The differentially expressed genes in response to +Fe, +Fe+flg22, -Fe, -Fe+flg22 were analyzed. It has 36 samples in total, with 3 biogical replicates for each condition and each genotype.

2023-10-09 | GSE213557 | GEO

PCSK9 knockdown in EndoC-bH1 cells at 72 hours

Project description:PCSK9 knockdown in EndoC-bH1 cells at 72 hours

| PRJNA754177 | ENA