Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Population Genomics of Amanita phalloides

PROVIDER: PRJNA565149 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10129200_1.fastq.gz	Fastqsanger.gz
	SRR10129200_2.fastq.gz	Fastqsanger.gz
	SRR10129300_1.fastq.gz	Fastqsanger.gz
	SRR10129300_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 349

Similar Datasets

Amanita phalloides

Project description:Amanita phalloides overview

| PRJNA591681 | ENA

Project description:Amanita phalloides transcriptome

| PRJNA689850 | ENA

Genome-wide CRISPR loss-of-function screen for α-amanitin

Project description:The “death cap”, Amanita phalloides, is the world’s most poisonous mushroom, responsible for 90% of mushroom-related fatalities. The most fatal component of the death cap is α-amanitin(AMA). Despite its lethal effect, the exact mechanisms of how α-amanitin poisons humans remain unclear, leading to no specific antidote available for treatment. Here, we performed a genome-wide CRISPR loss-of-function screen to identify genes and pathways involved in AMA cytotoxicity.

2023-03-07 | GSE226447 | GEO

Gene expression changes in Amanita muscaria- Populus tremula x tremuloides ectomycorrhizal root tips compared to Amanita muscaria free-living mycelium

2015-02-06 | GSE63867 | GEO

Gene expression changes in Amanita muscaria- Populus tremula x tremuloides ectomycorrhizal root tips compared to Amanita muscaria free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Amanita muscaria ectomycorrhizal root tips compared to free-living mycelium . Ectomycorrhizal root tips and control mycelium were harvested after 6 weeks and used for RNA extraction. Reads of 150 bp were generated and aligned to Amanita muscaria transcripts (http://genome.jgi-psf.org/Amamu1) using CLC Genomics Workbench 7. mRNA profiles from Amanita muscaria ectomycorrhizal root tips and free-living mycelium were generated by Illumina HiSeq2000 sequencing (150bp). Two biological replicates were sequenced for mycorrhizal and mycelium samples.

2015-02-06 | E-GEOD-63867 | biostudies-arrayexpress

Amanita phalloides strain:Alameda01

Project description:Amanita phalloides strain:Alameda01 Genome sequencing and assembly

| PRJNA339450 | ENA

Project description:Amanita comparative genomics

| PRJNA485427 | ENA

Characterization of protein dynamics after alpha-amanitin exposure in hepatoma cells

Project description:Alpha-amanitin (α-AMA) is a cyclic peptide and is one of the most lethal mushroom amatoxins found in Amanita phalloides. α-AMA is known to cause hepatotoxicity through RNA polymerase II inhibition, which acts in RNA and DNA translocation. To investigate the toxic signature of α-AMA beyond known mechanisms, we used quantitative nanoflow liquid chromatography-tandem mass spectrometry analysis coupled with tandem mass tag labeling to examine proteome dynamics in Huh-7 human hepatoma cells treated with toxic concentrations of α-AMA. We identified 1,828 proteins, quantified 1,563 proteins, and found a decrease of four subunits in T-complex protein 1-ring complex protein that was dependent on the α-AMA concentration. We conducted bioinformatics analyses of the quantified proteins to characterize the toxic signature of α-AMA in hepatoma cells. This is the first report of global proteome abundance changes according to α-AMA concentration variations and suggests a possible novel molecular regulation mechanism for hepatotoxicity.

2021-09-09 | PXD018702 | Pride

Rhopalocnemis phalloides

Project description:Rhopalocnemis phalloides genome and transcriptome sequencing

| PRJNA495456 | ENA

Project description:Pilot population genomics

| PRJNA1127238 | ENA