Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Global scale transcriptome analysis during early somatic embryogenesis in Dimocarpus longan Lour.

PROVIDER: PRJNA565345 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10112229_1.fastq.gz	Fastqsanger.gz
	SRR10112229_2.fastq.gz	Fastqsanger.gz
	SRR10112230_1.fastq.gz	Fastqsanger.gz
	SRR10112230_2.fastq.gz	Fastqsanger.gz
	SRR10112231_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Project description:Dimocarpus longan Lour Umbrella BioProject

| PRJNA374882 | ENA

Dimocarpus longan

Project description:Dimocarpus longan Lour. WGS project

| PRJNA305337 | ENA

Dimocarpus longan

Project description:Analysis of the global transcriptome of 'sijimi' longan (Dimocarpus longan Lour.) using Illumina paired-end sequencing

| PRJNA329283 | ENA

Dimocarpus longan

Project description:Dimocarpus longan Lour.(DNA) Raw sequence reads

| PRJNA1137431 | ENA

Dimocarpus longan

Project description:Dimocarpus longan somatic embryo smallRNA solexa sequencing

| PRJNA297248 | ENA

Dimocarpus longan

Project description:longan (Dimocarpus longan) flower transcriptome

| PRJNA731294 | ENA

Dimocarpus longan

Project description:Dimocarpus longan Transcriptome

| PRJNA326792 | ENA

Dimocarpus longan

Project description:Dimocarpus longan overview

| PRJNA88511 | ENA

Stage-specific protein regulation during somatic embryo development of Carica papaya L. ‘Golden’

Project description:Somatic embryogenesis is an important biotechnological technique for large-scale propagation of elite genotypes. Correlations of stage-specific compounds associated with somatic embryo development can help elucidate the ontogenesis of Carica papaya L. somatic embryos and improve tissue culture protocols. To identify the stage-specific proteins that are present during the differentiation of C. papaya somatic embryos, proteomic analyses of embryos at the globular, heart, torpedo and cotyledonary stages were performed. Comparative proteomic analysis revealed a total of 801 proteins, 392 of which were classified as differentially accumulated proteins in at least one of the developmental stages. The globular stage presented a higher number of unique proteins (16), 7 of which were isoforms of 60S ribosomal proteins, suggesting high translational activity at the beginning of somatic embryogenesis. Proteins related to mitochondrial metabolism accumulated to a high degree at the early developmental stages, after which they decreased with increasing development, contributing to cell homeostasis in early somatic embryos. On the other hand, a progressive increase in the accumulation of vicilin, late embryogenesis abundant proteins and chloroplastic proteins leading to somatic embryo maturation was observed. Additionally, the differential accumulation of acetylornithine deacetylase and S-adenosylmethionine synthase 2 proteins correlated with increased contents of putrescine and spermidine, suggesting that polyamine metabolism is important to somatic embryo development. Taken together, the results showed that somatic embryo development in C. papaya is regulated by the differential accumulation of proteins, with ribosomal and mitochondrial proteins being more abundant during the early somatic embryo stages, while proteins involved in seed maturation are more abundant during the late stages.

2020-11-12 | PXD021107 | Pride

Transcriptome profiling of Arabidopsis embryogenesis in vitro

Project description:Somatic embryogenesis closely resembles zygotic embryogenesis and hence, it is considered as a model system to explore dynamic events of embryogenesis, at a molecular level. We sequenced three district developmental time points of somatic embryo development in Arabidopsis thaliana with the aim of exploring transcriptomes at a global scale.

2016-01-31 | E-MTAB-2403 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data