Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Radulomyces confluens

ABSTRACT: Radulomyces confluens overview

PROVIDER: PRJNA573279 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10402497_subreads.fastq.gz	Fastqsanger.gz
	SRR10402498_subreads.fastq.gz	Fastqsanger.gz
	SRR9009076_1.fastq.gz	Fastqsanger.gz
	SRR9009076_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

2013-09-20 | GSE41631 | GEO

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

Project description:This transcriptome analysis accompanies the genome sequencing of Pyronema confluens for purposes of annotation and gene expression quantification. P. confluens is a basal filamentous ascomycete that forms primitive fruiting bodies (apothecia) to generate its sexual spores. We have performed RNA-seq for two growth conditions allowing only vegetative growth and one condition allowing sexual development to identify genes that are differentially regulated during fruiting body formation. The samples sex (sexual development), DD (growth in darkness, no sexual development), and vegmix (pool of several conditions, no sexual development) were sequenced as paired-end reads on an Illumina HiSeq 2000, two independent biological replicates for each sample, two technical replicates for each biological replicate (each library was sequenced twice in two independent flow cells).

2013-09-20 | E-GEOD-41631 | biostudies-arrayexpress

Pyronema omphalodes CBS 100304

Project description:Pyronema confluens circadian rhythm analysis

| PRJNA260620 | ENA

Radulomyces confluens strain:OMC1631 | isolate:FBCC 2450

Project description:Radulomyces confluens OMC1631 Transcriptome - Ottogen5_T

| PRJNA538442 | ENA

Gene expression in protoapothecia from Pyronema confluens

Project description:The aim of this analysis was to analyze gene expression in young fruiting bodies of the filamentous ascomycete Pyronema confluens. Young fruiting bodies were isolated by laser microdissection, RNA was extracted, amplified and used for RNA-sequencing. The resulting data were compared to data from total vegetative and sexual mycelium from a previous analysis.

2018-03-26 | GSE61274 | GEO

Pyronema omphalodes CBS 100304

Project description:Gene expression in protoapothecia from Pyronema confluens

| PRJNA260634 | ENA

Radulomyces confluens strain:OMC1631 | isolate:FBCC 2450

Project description:Radulomyces confluens OMC1631 Standard Draft genome sequencing

| PRJNA571522 | ENA

Collybiopsis confluens strain:CBS 406.79

Project description:Gymnopus confluens genome sequencing, assembly, and trascriptome generation

| PRJNA496462 | ENA

Pyronema confluens circadian rhythm analysis

Project description:The aim of this analysis was the identification of candidate genes that might be regulated in a circadian manner in the filamentous ascomycete Pyronema confluens. The fungus was grown in submerged culture to promote vegetative growth, and after a period in constant light, the samples were shifted to darkness (DD). Cultures were sampled after 24 and 36 hours in DD. The samples were used for RNA-seq analysis, and candidate genes with significantly higher expression after 24 vs. 36 hours or the reverse were further analyzed with RT-qPCR.

2015-10-05 | GSE61263 | GEO

Divergent Patterns of Endogenous Small RNA Populations From Seed and Vegetative Tissues of Glycine max

Project description:An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean

2012-10-09 | GSE36728 | GEO