Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Overexpression of small RNA MTS1338 M.tuberculosis (stationary phase)

ABSTRACT: Overexpression of small RNA MTS1338 M.tuberculosis (stationary phase)

PROVIDER: PRJNA573681 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10163944.fastq.gz	Fastqsanger.gz
	SRR10163945.fastq.gz	Fastqsanger.gz
	SRR10163946.fastq.gz	Fastqsanger.gz
	SRR10163947.fastq.gz	Fastqsanger.gz
	SRR10163948.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Overexpression of small RNA MTS1338 M.tuberculosis (stationary phase)

Project description:We investigated the expression of MTS1338, a small non-coding RNA of Mycobacterium tuberculosis in bacterial cultures, and demonstrated its significant contribution to host-pathogen interactions.

2019-10-05 | GSE137857 | GEO

Acinetobacter oleivorans DR1 : WT stationary phase vs. aqsR mutant stationary phase

Project description:Transcriptional profiling of A. oleivorans DR1 cells comparing wild type stationary phase cells with aqsR mutant stationary phase cells.

2013-02-16 | GSE44347 | GEO

Xbp1 binding during log phase and stationary phase.

Project description:Xbp1 binding during log phase and stationary phase.

| PRJNA868333 | ENA

The small transcriptome of Escherichia coli in exponential and stationary phase

Project description:We have deep sequenced the small transcriptome of Escherichia coli growing in LB and in MOPS, in exponential and stationary phase, and analyzed the resulting reads by a novel pipeline STARPA (Stable RNA Processing Product Analyzer). Our analysis reveals over 14,000 small transcripts enriched during both growth stages. RNA samples were collected from total RNA pools or from crude ribosome pools and then size selected by electrophoresis to limit the products to 20-300nt.

2020-11-21 | GSE161907 | GEO

The small transcriptome of Escherichia coli in exponential and stationary phase

Project description:The small transcriptome of Escherichia coli in exponential and stationary phase

| PRJNA679896 | ENA

Stationary phase stimulon and CspC regulon

Project description:The cold shock proteins belong to a family of RNA binding proteins presenting a highly conserved domain, called cold shock domain (CSD). They are involved in various cellular processes, including adaptation to low temperature, nutritional stress, cell growth and stationary phase. Here we investigate the role of CspC in C. crescentus stationary phase and the molecular mechanisms underlying gene regulation by this protein. A global transcriptional profiling experiment comparing cspC and the wild type strain both at exponential and stationary phases was carried out. The results showed that the absence of cspC affected the transcription of 20 genes at exponential phase and 65 genes at stationary phase. Genes encoding enzymes of the glyoxylate cycle were severely downregulated in the mutant at stationary phase. The stationary phase-induced RNA binding protein CspC has an important role in gene expression at this phase. It is required for the expression of the essential gene sciP, the ECF sigma factor sigU, as well as of the genes for the glyoxylate cycle enzymes and for oxidative stress response.

2015-08-24 | GSE61726 | GEO

Xbp1 binding during log phase and stationary phase.

Project description:To determine where Xbp1 binds to chromatin during log phase and stationary phase, we performed ChIP-seq.

2022-08-17 | GSE210933 | GEO

E. coli MG1655 pJV300 stationary phase

Project description:E. coli MG1655 pJV300 stationary phase

| PRJEB41581 | ENA

Acinetobacter oleivorans DR1 : WT stationary phase vs. aqsR mutant stationary phase

Project description:Transcriptional profiling of A. oleivorans DR1 cells comparing wild type stationary phase cells with aqsR mutant stationary phase cells. To identify genes regulated QS system in A. oleivorans DR1, the cells were grown to stationary phase (OD600 >0=2.0).

2013-02-16 | E-GEOD-44347 | biostudies-arrayexpress

GAS M3 serotype, exponential versus stationary phase

Project description:MGAS315 is a wild type strain. RNA isolated in exponential phase and stationary phase were compared Keywords: Growth phase comparison

2007-06-28 | GSE5179 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data