Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Integration of systemic signals in plants

ABSTRACT: Integration of systemic signals in plants

PROVIDER: PRJNA575019 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10205900.fastq.gz	Fastqsanger.gz
	SRR10205901.fastq.gz	Fastqsanger.gz
	SRR10205902.fastq.gz	Fastqsanger.gz
	SRR10205903.fastq.gz	Fastqsanger.gz
	SRR10205904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Integration of systemic signals in plants

Project description:Transcriptome profiling (RNA-seq) of local and systemic tissue of Arabidopsis Col plants exposed to a local treatment of high light, heat stress and a combination of high light and heat stress on the same leafs or in different leaves

2020-06-29 | GSE138196 | GEO

Control of root thermomorphogenesis by systemic and local regulatory signals

Project description:Control of root thermomorphogenesis by systemic and local regulatory signals

| PRJNA574852 | ENA

Targeted site integration in plants using a transposon system

Project description:Targeted site integration in plants using a transposon system

| PRJNA943231 | ENA

WT and dTLec1-1 plants systemic wounding

Project description:Innate immune responses in animals and plants involve receptors that recognize microbe-associated molecules. In animals, activation of the Toll-NFkappaB pathway involves the recruitment of a series of TIR-domain containing adaptors that activate NFkappaB transcription factors. Plants contain many TIR modules as part of a large multi-gene TIR-NBS-LRR R-gene innate immune defense system as well as TIR-motif containing genes that lack LRR and whose functions are unknown. Molecular interactions for any TIR module signaling pathway has yet to be shown. Here we investigated the functional role of a TIR module linked to a lectin-containing motif, TIR-Lec1 (TLec1). We show that TLec1 acts as a positive modulator of the systemic JA-dependent wound response. TLec1 transcripts are rapidly induced in a JA-independent pathway and insertional mutants that TLec1 transcripts fail to show the full systemic wound response

2013-05-07 | GSE13895 | GEO

Large-scale analysis of the integration of enhancer-enhancer signals by promoters

Project description:Large-scale analysis of the integration of enhancer-enhancer signals by promoters

| PRJNA1004277 | ENA

Targeted site integration in plants using a transposon system [Amplicon]

Project description:Targeted site integration in plants using a transposon system [Amplicon]

| PRJNA943234 | ENA

Targeted site integration in plants using a transposon system [insertion-seq]

Project description:Targeted site integration in plants using a transposon system [insertion-seq]

| PRJNA943236 | ENA

Control of root thermomorphogenesis by systemic and local regulatory signals (18h RNA-seq)

Project description:Control of root thermomorphogenesis by systemic and local regulatory signals (18h RNA-seq)

| PRJNA574854 | ENA

Control of root thermomorphogenesis by systemic and local regulatory signals (4h RNA-seq)

Project description:Control of root thermomorphogenesis by systemic and local regulatory signals (4h RNA-seq)

| PRJNA574855 | ENA

Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments [ChIP-seq]

Project description:Unlike plants in the field, which experience significant temporal fluctuations in environmental conditions, plants in the laboratory are typically grown in controlled, stable environments. Therefore, signaling pathways evolved for survival in continuously fluctuating environments often remain functionally latent in laboratory settings. Here, we show that TGA1 and TGA4 act as hub transcription factors through which the expression of genes involved in high-affinity nitrate uptake are regulated in response to shoot-derived phloem mobile polypeptides, CEP DOWNSTREAM 1 (CEPD1), CEPD2 and CEPD-like 2 (CEPDL2) as nitrogen (N) deficiency signals, and Glutaredoxin S1 (GrxS1) to GrxS8 as N sufficiency signals. CEPD1/2/CEPDL2 and GrxS1-S8 competitively bind to TGA1/4 in roots, with the former acting as transcription coactivators that enhance the uptake of nitrate, while the latter function as corepressor complexes together with TOPLESS (TPL), TPL-related 1 (TPR1) and TPR4 to limit nitrate uptake. Arabidopsis plants deficient in TGA1/4 maintain basal nitrate uptake and exhibit growth similar to wild-type plants in a stable N environment, but were impaired in regulation of nitrate acquisition in response to shoot N demand, leading to defective growth under continuously fluctuating N environments where rhizosphere nitrate ions switch periodically between deficient and sufficient states. TGA1/4 are crucial transcription factors that enable plants to survive under fluctuating and challenging N environmental conditions.

2024-07-11 | GSE240737 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data