Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chemical reprogramming of fibroblasts to photoreceptor like cells

ABSTRACT: Chemical reprogramming of fibroblasts to photoreceptor like cells

PROVIDER: PRJNA576241 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10239938_1.fastq.gz	Fastqsanger.gz
	SRR10239938_2.fastq.gz	Fastqsanger.gz
	SRR10239939_1.fastq.gz	Fastqsanger.gz
	SRR10239939_2.fastq.gz	Fastqsanger.gz
	SRR10239940_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Chemical reprogramming of fibroblasts to photoreceptor like cells [RNA-Seq]

Project description:Chemical reprogramming of fibroblasts to photoreceptor like cells [RNA-Seq]

| PRJNA576236 | ENA

Chemical reprogramming of fibroblasts to photoreceptor like cells [ATAC-Seq]

Project description:Chemical reprogramming of fibroblasts to photoreceptor like cells [ATAC-Seq]

| PRJNA576238 | ENA

Chemical reprogramming of human fibroblasts

Project description:Chemical reprogramming of human fibroblasts

| PRJNA509474 | ENA

Chemical reprogramming of fibroblasts to photoreceptor like cells [ATAC-Seq]

Project description:Reprogramming of mouse embryonic fibroblasts (MEFs) to photorereceptor like cells by five chemicals.

2019-12-11 | GSE138521 | GEO

Chemical reprogramming of fibroblasts to photoreceptor like cells [RNA-Seq]

Project description:Reprogramming of mouse embryonic fibroblasts (MEFs) to photorereceptor like cells by five chemicals.

2019-12-11 | GSE138520 | GEO

Genome-wide chromatin landscape of chemical-induced neural stem cell reprogramming from defined fibroblasts

Project description:Cellular reprogramming using chemically defined conditions, without genetic manipulation, is a promising approach for generating clinically relevant cell types for regenerative medicine and drug discovery. However, small molecule-driven approaches for inducing lineage-specific stem cells from somatic cells across lineage boundaries have been challenging to develop. Here, we report highly efficient reprogramming of mouse fibroblasts into induced neural stem cell-like cells (ciNSLCs) using a cocktail of nine small molecules (M9). The resulting ciNSLCs closely resemble primary neural stem cells molecularly and functionally. Transcriptome analysis revealed that M9 induces a gradual and specific conversion of fibroblasts towards a neural fate. During reprogramming specific transcription factors such as Elk1 and Gli2 that are downstream of M9-induced signaling pathways bind and activate endogenous master neural genes to specify neural identity. Our study therefore provides an effective chemical approach for generating neural stem cells from mouse fibroblasts, and reveals mechanistic insights into underlying reprogramming process. Genome-wide epigenetic changes of H3K4me1, H3K4me3, H3K27me3, and H3K27ac were analyzed by CHIP-seq for tdMEFs from day 0 (ciNSLC), day 4 (D4), day 8 (D8) of M9-induced neural reprogramming, and ciNSLCs and pri-NPC.

2016-05-15 | E-GEOD-78977 | biostudies-arrayexpress

Genome-wide chromatin landscape of chemical-induced neural stem cell reprogramming from defined fibroblasts

2016-05-15 | GSE78977 | GEO

Single cell dissection of Chemical Reprogramming from Fibroblasts into functional Chondrocytes

Project description:Single cell dissection of Chemical Reprogramming from Fibroblasts into functional Chondrocytes

| PRJNA485015 | ENA

Direct reprogramming of mouse fibroblasts into cardiomyocytes with chemical cocktails

Project description:The direct conversion, or trans-differentiation, of non-cardiac cells into cardiomyocytes by forced expression of transcription factors and microRNAs provide promising ways of cardiac regeneration. However, genetic manipulations are still not desirable in real clinical applications. we report the generation of automatically beating cardiomyocyte-like cells from mouse fibroblasts with only chemical cocktails. These chemical-induced cardiomyocyte-like cells (CiCMs) express cardiomyocyte-specific markers, exhibit sarcomeric organization, and possess typical cardiac calcium flux and electrophysiological features. Microarray-bassed gene expression patterns of Mouse embryonic fibroblasts (MEFs), CiCMs, and cardiomyocytes(CMs) indicated a clear transition from dividing MEFs to differentiated cardiomyocyte-like state in CiCM samples. Mouse embryonic fibroblasts were treated with a small-molecule combination CRFVPT (10 μM CHIR99021 (C); 10 μM RepSox (R); 50 μM Forskolin (F); 0.5 mM VPA (V); 5 μM Parnate, (P); 1 μM TTNPB (T)) to induce transdifferentiation to chemical-induced cardiomyocyte-like cells. CiCMs beating clusters were picked at day 24 for analysis. MEFs were isolated from mouse embryos, and CMs were isolated from mouse hearts. Total RNA of MEFs, CiCMs and CMs were extracted and hybridization on Affymetrix microarrays.

2015-08-23 | E-GEOD-69924 | biostudies-arrayexpress

Analysis of gene expression profile in photoreceptor-like cells derived from fibroblasts

Project description:To clarify disease-specific profiles, we employed DNA microarray analysis using induced photoreceptor-like cells derived from fibroblasts.

2022-04-04 | GSE199050 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data