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Paenibacillus phytohabitans strain:LMG 31459

ABSTRACT: Paenibacillus phytohabitans strain:LMG 31459 Genome sequencing and assembly

PROVIDER: PRJNA578287 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	WHOB01.dat.gz	Other
	WHOB01.fasta.gz	Fasta.gz
	WHOB01.master.dat	Other

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Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Paenibacillus elgii strain:LMG 24465

Project description:Paenibacillus elgii strain:LMG 24465 Genome sequencing and assembly

| PRJNA605635 | ENA

Paenibacillus frigoriresistens strain:LMG 31322

Project description:Paenibacillus frigoriresistens strain:LMG 31322 Genome sequencing and assembly

| PRJNA635093 | ENA

Paenibacillus plantarum strain:LMG 31461

Project description:Paenibacillus plantarum strain:LMG 31461 Genome sequencing and assembly

| PRJNA578275 | ENA

Paenibacillus planticolens strain:LMG 31457

Project description:Paenibacillus planticolens strain:LMG 31457 Genome sequencing and assembly

| PRJNA578276 | ENA

Paenibacillus qinlingensis strain:LMG 31363

Project description:Paenibacillus qinlingensis strain:LMG 31363 Genome sequencing and assembly

| PRJNA635091 | ENA

Paenibacillus alba strain:LMG 31323

Project description:Paenibacillus alba strain:LMG 31323 Genome sequencing and assembly

| PRJNA635094 | ENA

Paenibacillus foliorum strain:LMG 31456

Project description:Paenibacillus foliorum strain:LMG 31456 Genome sequencing and assembly

| PRJNA578274 | ENA

Paenibacillus phytorum strain:LMG 31458

Project description:Paenibacillus phytorum strain:LMG 31458 Genome sequencing and assembly

| PRJNA578286 | ENA

Paenibacillus germinis strain:LMG 31460

Project description:Paenibacillus germinis strain:LMG 31460 Genome sequencing and assembly

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