Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paenibacillus tritici strain:LMG 29502

ABSTRACT: Paenibacillus tritici strain:LMG 29502 Genome sequencing and assembly

PROVIDER: PRJNA635088 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JABMKX01.dat.gz	Other
	JABMKX01.fasta.gz	Fasta.gz
	JABMKX01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Paenibacillus tritici

Project description:Paenibacillus tritici overview

| PRJNA723398 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Paenibacillus tritici strain:PH55-1

Project description:Paenibacillus tritici strain:PH55-1 Genome sequencing

| PRJNA723129 | ENA

Paenibacillus elgii strain:LMG 24465

Project description:Paenibacillus elgii strain:LMG 24465 Genome sequencing and assembly

| PRJNA605635 | ENA

Paenibacillus frigoriresistens strain:LMG 31322

Project description:Paenibacillus frigoriresistens strain:LMG 31322 Genome sequencing and assembly

| PRJNA635093 | ENA

Paenibacillus plantarum strain:LMG 31461

Project description:Paenibacillus plantarum strain:LMG 31461 Genome sequencing and assembly

| PRJNA578275 | ENA

Paenibacillus planticolens strain:LMG 31457

Project description:Paenibacillus planticolens strain:LMG 31457 Genome sequencing and assembly

| PRJNA578276 | ENA

Paenibacillus qinlingensis strain:LMG 31363

Project description:Paenibacillus qinlingensis strain:LMG 31363 Genome sequencing and assembly

| PRJNA635091 | ENA

Paenibacillus alba strain:LMG 31323

Project description:Paenibacillus alba strain:LMG 31323 Genome sequencing and assembly

| PRJNA635094 | ENA

Paenibacillus foliorum strain:LMG 31456

Project description:Paenibacillus foliorum strain:LMG 31456 Genome sequencing and assembly

| PRJNA578274 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data