Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of microbial communities with different carbon source types

ABSTRACT: Comparison of microbial communities with different carbon source types

PROVIDER: PRJNA578404 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10312739_1.fastq.gz	Fastqsanger.gz
	SRR10312739_2.fastq.gz	Fastqsanger.gz
	SRR10312740_1.fastq.gz	Fastqsanger.gz
	SRR10312740_2.fastq.gz	Fastqsanger.gz
	SRR10312741_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Comparison of microbial communities with different carbon source types

Project description:We reported the microbial communities in the biofilm anoxic-oxic-MBR system operated with different carbon source types.

2019-10-19 | GSE139113 | GEO

different carbon source for vanadium or nitrate-liquid carbon source/different pollutants addition type

Project description:different solid carbon source for vanadium or nitrate

| PRJNA816649 | ENA

different carbon source for vanadium or nitrate

Project description:different carbon source for vanadium or nitrate Raw sequence reads

| PRJNA777970 | ENA

Aspergillus niger exposed to combinations of carbon source, nitrogen source, nitrogen concentration, and culture pH

Project description:Microarray analysis of Aspergillus niger under conditions with differing combinations of carbon source, nitrogen source, nitrogen concentration, and culture pH Fermentor cultures were grown in minimal medium (MM) at a constant temperature of 30 ± 0.5 ºC and with differing combinations of carbon source (either 277.5 mM glucose or 333.0 mM xylose), nitrogen source (NH4Cl or NaNO3) and nitrogen concentration (4x: 282.4 mM; 8x: 564.8 mM), and pH (pH4 or pH5) of the medium (M. Braaksma, A.K. Smilde, M.J. van der Werf, P.J. Punt, submitted for publication). At different time points samples were collected, quenched immediately in methanol at -45 ºC and centrifuged at -20 ºC to remove supernatant. Part of the biomass was frozen into liquid nitrogen and stored at -80 ºC for microarray analysis. For each of the 16 culture conditions one sample was selected for microarray analysis; samples were collected either around the time point carbon source depleted or a considerable time (~24 h) after carbon souce depletion. In addition some technical duplicates were included.

2010-04-08 | GSE17329 | GEO

different solid carbon source for vanadium or nitrate bioreduction

Project description:different solid carbon source for vanadium or nitrate bioreduction Raw sequence reads

| PRJNA816659 | ENA

Carbon source availability drives nutrient utilization in CD8+ T cells

Project description:Investigating the impact of physiological carbon source (PCS) availability on the transcriptional profile of activated CD8+ T cells proliferating in vitro

2022-09-01 | GSE205002 | GEO

Transcriptomic profile of Clostridium thermocellum ATCC27405 using switchgrass as carbon source

Project description:Clostridium thermocellum is a Gram-positive, anaerobic, thermophilic bacterium that ferments cellulose into ethanol. It is a candidate industrial consolidated bioprocess (CBP) biocatalyst for lignocellulosic bioethanol production to produce bioethanol directly from cellulosic biomass. However, few transcriptomic studies have been reported so far for C. thermocellum using biomass as carbon source. In this study, samples were taken from exponential and stationary phases of C. thermocellum cells growing in MTC media with pretreated switchgrass as carbon source, and transcriptomic profiling change of C. thermocellum during different growth phase was investigated using both expression array and tiling array. This study will help the understanding of gene expression of C. thermocellum using cellulosic biomass as carbon source and the knowledge will facilitate future metabolic engineering effort for strain improvement.

2014-05-08 | GSE26926 | GEO

Carbon Source Induced Gene Expression

Project description:Investigation of whole genome gene expression level changes in Streptomyces sp. SirexAA-E (ActE) when grown on different carbon sources. The results of this study demonstrate that ActE upregulates a small number of genes specific for the utilization of the avaliable carbon source. Cellulolytic Streptomyces sp. SirexAA-E (ActE), isolated from the pinewood-boring wasp Sirex noctilio, has a genome enriched for biomass utilization. The secreted proteomes obtained from growth on pure polysaccharides catalyzed hydrolysis of cellulose, mannan, and xylan with specific activities comparable to Spezyme CP, a commercial cellulase preparation. During reaction of an ActE secretome with cellulose, reducing sugar release was markedly stimulated in the presence of O2. ActE also expresses and secretes an expanded repertoire of enzymes during growth on natural and pre-treated biomass. These results indicate a new microbial contribution to biomass utilization that is widely distributed in natural environments by insects Streptomyces sp. ActE was grown in minimal medium supplimented with 0.5% carbon source (glucose, sigmacell-20, xylan, chitin, cellobiose, or AFEX). Cells were grown for 7 days and total RNA was extracted from the cell pellet. At least 3 biological replicates were performed for each carbon source (glucose, 3; sigmacell, 3; xylan, 5; chitin, 3; cellobiose 3; AFEX 3). Each biological replicate contained 3 technical replicates. The complete dataset were RMA Background Corrected, quantile normalized, the RMA algorithm was utilized by DNAStar ArrayStar.

2013-12-31 | E-GEOD-31748 | biostudies-arrayexpress

Transcriptomic analysis of Alishewanella species utilizing pectin as a sole carbon source

Project description:Comparative transcriptomic analysis of three Alishewanella species utilizing pectin as a sole carbon source

2013-03-29 | GSE45511 | GEO

Comparison of Corynebacterium glutamicum with GABA or glucose as carbon source

Project description:Comparison of Corynebacterium glutamicum with GABA or glucose as carbon source

| PRJNA577460 | ENA