Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bisulfite ddRAD sequencing of historic Peromyscus museum specimens

PROVIDER: PRJNA578759 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10321100_1.fastq.gz	Fastqsanger.gz
	SRR10321100_2.fastq.gz	Fastqsanger.gz
	SRR10321024_1.fastq.gz	Fastqsanger.gz
	SRR10321024_2.fastq.gz	Fastqsanger.gz
	SRR10321025_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 154

Similar Datasets

Peromyscus Museum Genomics

Project description:Peromyscus Museum Genomics

| PRJEB33530 | ENA

Project description:Shotgun sequencing of museum specimens (Tenebrionidae: Pedinini)

| PRJNA443422 | ENA

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the MNase (micrococcal nuclease) assays. Our team aims to optimise these assays for application in museum preserved formalin-exposed specimens. To do so, we applied an optimised MNase assay to fresh-frozen and archival eastern water dragon specimens, as old as 1905. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are sex-specific and environmental condition dependent.

2024-03-01 | GSE256157 | GEO

Archival chromatin sequencing in formalin-fixed mouse specimens [FAIRE and Mnase]

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) and MNase (micrococcal nuclease) assays. Here, we optimised the FAIRE and MNase assays for application upon heavily-fixed tissues as is typically found in historical formalin-preserved museum specimens. We demonstrate these assays in formalin-fixed mouse specimens and compare the chromatin signatures to specimen-matched fresh tissues. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are reproducible, tissue-specific and sex-specific in vertebrate specimens.

2024-03-15 | GSE261169 | GEO

Project description:Drosophila melanogaster genomes from museum specimens

| PRJNA945389 | ENA

Project description:Gut Microbiota of Amphibian Museum Specimens

| PRJNA836960 | ENA

Archival chromatin sequencing in formalin-fixed mouse specimens

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) and MNase (micrococcal nuclease) assays. Here, we optimised the FAIRE and MNase assays for application upon heavily-fixed tissues as is typically found in historical formalin-preserved museum specimens. We demonstrate these assays in formalin-fixed mouse specimens and compare the chromatin signatures to specimen-matched fresh tissues. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are reproducible, tissue-specific and sex-specific in vertebrate specimens.

2024-03-01 | GSE256158 | GEO

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Archival chromatin sequencing in eastern water dragon museum specimens

| PRJNA1078353 | ENA

Project description:A high throughput sequencing approach for octocoral museum specimens

| PRJNA670602 | ENA

Hippotragus leucophaeus

Project description:Identification of blue antelope museum specimens using mtDNA

| PRJNA776136 | ENA