Project description:Intertidal fishes are found in large numbers and play an important role in their ecosystems, but knowledge of their ecology is still very limited in many tropical regions. Within this context, data from intertidal fishes in Mauritius were compiled from different sources and intertidal resident species were examined in Mauritian tidepools. A total of 292 fish species occurring in Mauritius were reported from intertidal habitats, of which 62 species represent permanent intertidal residents. The species number in the studied pools increased, not only with the proportion of stones and rock covering the pool bottom, but also with pool facilities, for example, the supply of boulders and a high coverage of macro-algae. All examined pools were dominated by two species, Bathygobius coalitus and Istiblennius edentulus. Their abundance increased with decreasing pool size, peaking in pools with a surface area between 1-2 m2 during the lowest level of ebb tide. This 'overcrowding effect' may be linked to the absence of predators in these very small pools. The comparison of present data with results of a survey made in the same area in 1995 suggested a decrease of resident species occurred during the last decades, probably linked to human influences, such as eutrophication and water pollution.
Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.
