Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fish-T1K (transcriptomes of 1000 fishes)

ABSTRACT: Fish-T1K (Transcriptomes of 1000 fishes)_Phylogeny Project Raw sequence reads

PROVIDER: PRJNA398732 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5997670_1.fastq.gz	Fastqsanger.gz
	SRR5997670_2.fastq.gz	Fastqsanger.gz
	SRR5997680_1.fastq.gz	Fastqsanger.gz
	SRR5997680_2.fastq.gz	Fastqsanger.gz
	SRR5997690_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 268

Similar Datasets

Fishes strain:Muscle | isolate:Fish | cultivar:Fish

Project description:Fishes strain:Muscle | isolate:Fish | cultivar:Fish Genome sequencing

| PRJNA532748 | ENA

The 1000 Genomes Project

Project description:The 1000 Genomes Project

| PRJNA28889 | ENA

Effects of the total replacement of fish meal and fish oil with plant protein and oil sources on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) sub-families exhibiting different growth potentials on an all plant-based diet

Project description:Comparison of the hepatic transcriptomes for two half-sib-families of European sea bass fed on vegetable and fish diet. These two half-sib-families exhibit similar growth on fish diet while significantly different on vegetable diet. The aim of the study is to point out the large panel of metabolic and physiological effects induced by total substitution of both fish meal and fish oil in the diets of European sea bass and to reveal physiological characteristics associated to the two half-sib-families. Fish from both two half-sib-families (G and g) were fed a a fish diet (FD) or a vegetable diet (VD) diet for 9 months. Five to eight independent experiments were performed for each experimental groups (G-FD; G-VD; g-FD; g-VD) using different fishes for each experiment.

2011-08-31 | E-GEOD-27649 | biostudies-arrayexpress

Comparison of low temperature transcriptomes between tilapia and zebrafish

Project description:Changes in gene expression are thought to be required for maintaining tissue's proper function under cold stress, but little is known about the role of each tissue in setting the cold tolerance ability in fish. Oreochromis niloticus and Danio rerio are two tropical fishes; they differ in their abilities of cold tolerance. In this study, both fishes were exposed to graded cold temperatures, ranging from 28°C to 18°C and 10°C, and the transcriptomes of 8 tissues at each tempeature were sequenced and compared. By characterizing tissue-based gene expression variation between the two fishes we identified some key tissue specific biological processes, which provide a better understating of the typical biological functions of tissues in physiological fitness under cold stress.

2017-11-30 | GSE63727 | GEO

Brachyspira pilosicoli 95/1000

Project description:Brachyspira pilosicoli 95/1000 genome sequencing project.

| PRJNA48097 | ENA

Teleost fishes

Project description:Fish viviparity project, draft genome assemblies

| PRJNA1066408 | ENA

1000 Genomes Phase 3 aCGH samples

Project description:Copy number profiling of 1000 Genomes Phase 3 inidividuals using the Agilent 1M aCGH arrays Two color experiment. NA10851 used as reference against 2534 other individuals from the phase 3 of the 1000 Genomes project

2015-07-01 | E-GEOD-70188 | biostudies-arrayexpress

1000 Genome Pilot Projects

Project description:Three pilot studies for the 1000 Genomes project.

| PRJNA61209 | ENA

Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas)

Project description:Fathead minnow and zebrafish are among the most intensively studied fish species in environmental toxicogenomics. To aid the assessment and interpretation of subtle transcriptomic effects from treatment conditions of interest, there needs to be a better characterization and understanding of the natural variation in gene expression among fish individuals within populations. Little effort, however, has been made in this area. Leveraging the transcriptomics data from a number of our toxicogenomics studies conducted over the years, we conducted a meta-analysis of nearly 600 microarrays generated from the ovary tissue of untreated, reproductively mature fathead minnow and zebrafish samples. As expected, there was considerable batch-to-batch transcriptomic variation; this “batch-effect” appeared to impact the fish transcriptomes randomly. The overall level of variation within-batch was quite low in fish ovary tissue, making it a suitable system for studying chemical stressors with subtle biological effects. The within-batch variation, however, differed considerably among individual genes and molecular pathways. This difference in variability is probably both technical and biological, thus suggesting a need to take into account both the expression levels and variance in evaluating and interpreting the transcriptional impact on genes and pathways by experimental conditions. There was significant conservation of both the genomes and transcriptomes between fathead minnow and zebrafish. The conservation to such a degree would enable not only a comparative biology approach in studying the mechanisms of action underlying environmental stressors, but also effective sharing of a large amount of existing public transcriptomics data for future development of toxicogenomics applications. total RNA from the ovary tissue of treated or control fish labeled in single color was hybridized to Agilent fathead minnow microarray (design 019597)

2015-08-01 | E-GEOD-60126 | biostudies-arrayexpress