Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Methane Seeps and Independent Methane Plumes in the South China Sea offshore Taiwan

PROVIDER: PRJNA592351 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10589300_1.fastq.gz	Fastqsanger.gz
	SRR10589300_2.fastq.gz	Fastqsanger.gz
	SRR10589301_1.fastq.gz	Fastqsanger.gz
	SRR10589301_2.fastq.gz	Fastqsanger.gz
	SRR10589302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 102

Similar Datasets

a New Marine-Derived Asterosaponin (CN-3) alleviated the proliferation of U251 MG cells

Project description:Analysis of U251 glioblastoma multiforme (GBM) cells treated with a new culcita novaeguineae asterosaponion, CN-3. A new asterosaponin was isolated from culcita novaeguineae, an abundant marine resource in the south China sea. The asterosaponin induced significant growth inhibition with a 50% inhibitory concentration at 48 h of 2.013 μg/mL in U251MG cells. 1.8μg/mL of the asterosaponin reduced U251 MG cells viability from 100 % to 42.5% (24 h), 37.4% (48 h) and 52.1% (72 h). In this study, a microarray analysis was performed using RNA prepared from U251MG GBM cells treated with the asterosaponion. These data revealed that 661 genes had significant differential expressions.

2020-06-16 | GSE108343 | GEO

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico

Project description:Bathymodiolin mussels are a group of bivalves associated with deep-sea reducing habitats, such as hydrothermal vents and cold seeps. These mussels usually engage in an obligatory symbiosis with sulfur and/or methane oxidizing Gammaproteobacteria. In addition to these bacteria, Bathymodiolus heckerae that inhabit gas and oil seeps in Campeche Bay, the southern Gulf of Mexico, host bacteria phylogenetically with the Cycloclasticus genus. We recently discovered the capability for short-chain alkane degradation in draft genomes of symbiotic Cycloclasticus. With proteomics, we investigated whether the genes required for this process are expressed by the symbionts.

2016-12-05 | PXD005351 | Pride

marine sediment metagenome

Project description:bacterial coummunity of South China Sea

| PRJDB544 | ENA

marine metagenome

Project description:The South China Sea Targeted Locus (Loci)

| PRJNA207724 | ENA

marine metagenome

Project description:Bacterial community in the South China Sea

| PRJNA245375 | ENA

marine sediment metagenome

Project description:Microbial community of deep sea sediment in South China Sea

| PRJNA360023 | ENA

Transcriptome studies of marine natural products 4a and 4d on non-small cell lung cancer A549 cells

Project description:Two novel polyketides, ocellatusones A and B (1 and 2), characterized by either an uncommon oxatricyclo[4.2.1.02,4]nonane skeleton (1) or a mesitylene connected dimethylfuran-3(2H)-one nucleus (2), were isolated in racemic forms from the South China Sea sacoglossan Placobranchus ocellatus, together with seven uncommon polypropionates (3, 4a,4d, 5, and 6). Compounds 1 and 2 were further separated by chiral HPLC to their corresponding enantiomers (±)-1 and (±)-2, respectively. The structures, including absolute configurations, of the new compounds, were unambiguously determined by extensive spectroscopic analysis, quantum chemical computation, and/or X-ray diffraction analysis. The new compounds (+)-1, 4a, 4b, 4d exhibited interesting dose dependent cytotoxic effect on human cancer cell lines, including non-small cell lung cancer and acute promyelocytic leukemia, with IC50 values ranging from 6.1 μM to 28.8 μM. A plausible bio-photosynthetic pathway of these isolates was proposed.

2019-06-26 | GSE132500 | GEO

marine sediment metagenome

Project description:The archaea from the South China Sea sequencing

| PRJNA285416 | ENA

marine metagenome

Project description:Microbial community isolated from South China Sea marine sediment

| PRJNA33581 | ENA

marine metagenome

Project description:Metagenomic sequence of #TS13_40m of the South China Sea

| PRJNA430185 | ENA