Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparative genomics of adaptation to nocturnal lifestyle in owls

PROVIDER: PRJNA592858 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10568153_1.fastq.gz	Fastqsanger.gz
	SRR10568153_2.fastq.gz	Fastqsanger.gz
	SRR10568154_1.fastq.gz	Fastqsanger.gz
	SRR10568154_2.fastq.gz	Fastqsanger.gz
	SRR10568155_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Limosilactobacillus reuteri

Project description:Comparative Genomics of the Herbivore Gut Symbiont Lactobacillus reuteri Reveals Genetic Diversity and Lifestyle Adaptation

| PRJNA472230 | ENA

Project description:Comparative genomics of parasitoid lifestyle as exemplified by Mermithidae and Nematomorpha

| PRJNA1126031 | ENA

undefined

Project description:Comparative Genomics of yeast adaptation to the phyllosphere

| PRJEB56439 | ENA

Escherichia coli strain:K12 BW 2952

Project description:Adaptation of Escherichia coli to intracellular lifestyle

| PRJNA304679 | ENA

The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Project description:Crassulacean acid metabolism (CAM) is a water-use efficient adaptation of photosynthesis that has evolved independently many times in diverse lineages of flowering plants. We hypothesize that convergent evolution of protein sequence and temporal gene expression underpins the independent emergences of CAM from C3 photosynthesis. To test this hypothesis, we generated a de novo genome assembly and genome-wide transcript expression data for Kalanchoe fedtschenkoi, an obligate CAM species within the core eudicots with a relatively small genome (~260 Mb). Our comparative analyses identified signatures of convergence in protein sequence and re-scheduling of diel transcript expression of genes involved in nocturnal CO2 fixation, stomatal movement, heat tolerance, circadian clock and carbohydrate metabolism in K. fedtschenkoi and other CAM species in comparison with non-CAM species. These findings provide new insights into molecular convergence and building blocks of CAM and will facilitate CAM-into-C3 photosynthesis engineering to enhance water-use efficiency in crops.

2018-01-09 | MTBLS519 | MetaboLights

The genomic basis of adaptation to extreme Arctic climate in Svalbard reindeer

Project description:Svalbard reindeer adaptation genomics

| PRJEB80888 | ENA

GNPS_Nocardia_siderophores_of_selected_strains

Project description:Nocardia metabolomics dataset from "Comparative Genomics to Metabolomics: Nocobactin Production in Nocardia"

2020-01-08 | MSV000084771 | GNPS

Small RNAs from 11 Drosophila species

Project description:Annotation of small RNAs from 11 Drosophila species for the purpose of non-coding RNA annotation and comparative genomics assessment.

2017-11-20 | GSE98013 | GEO

Energy Balance Drives Diurnal and Nocturnal Brain Transcriptome Rhythms

Project description:Plasticity in the daily timing of activity has been observed in a wide variety of species, yet the underlying mechanisms driving nocturnality and diurnality remain to be discovered. By regulating how much wheel-running activity will be rewarded with a food pellet, we can manipulate energy balance, and switch mice to be nocturnal or diurnal. Here we present the rhythmic transcriptome of 21 tissues, including 17 brain regions (hypothalamic, thalamic, cortical), sampled every 4 hours over a 24-hour period from nocturnal and diurnal male CBA/CaJ mice. Rhythmic gene expression across tissues comprised a different set of genes with minimal overlap between nocturnal and diurnal mice. We show that genes other than clock genes in the suprachiasmatic nucleus (SCN) of nocturnal and diurnal mice change, and the habenula was the most affected tissue. Our results indicate that adaptive flexibility in daily timing of behavior is supported by gene expression dynamics in many tissues and brain regions, especially in the habenula, which suggests a crucial role for the observed nocturnal-diurnal switch.

2024-02-14 | GSE228967 | GEO

Ursus americanus

Project description:Comparative functional genomics of adaptation to muscular disuse in hibernating mammals (black bears)

| PRJNA263797 | ENA