Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The High-throughput sequencing of microbes in douchi

PROVIDER: PRJNA599050 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10829600_1.fastq.gz	Fastqsanger.gz
	SRR10829600_2.fastq.gz	Fastqsanger.gz
	SRR10829571_1.fastq.gz	Fastqsanger.gz
	SRR10829571_2.fastq.gz	Fastqsanger.gz
	SRR10829572_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

To explore the relationship between new gene expression / mutation and survival of patients in colorectal cancer

Project description:Interventions: Case vs control:No Primary outcome(s): High-throughput sequencing Study Design: Case-Control study

| 2676067 | ecrin-mdr-crc

Project description:High-throughput sequencing of chicken gut microbes

| PRJNA759544 | ENA

Exploring the effect of different surgical methods on the prognosis of patients with colorectal cancer based on multiple omics

Project description:Interventions: left hemicolectomy:None;right hemicolectomy:None;sigmoid resection:None;radical rectal cancer:None;low rectal resection with prophylactic ileostomy:None Primary outcome(s): Fecal high-throughput sequencing;Fecal Metabolomics;immunomics Study Design: Factorial

| 85716 | ecrin-mdr-crc

Project description:High - throughput sequencing results of different goats intestinal microbes

| PRJNA436893 | ENA

Project description:16S and ITS High-throughput sequencing of rhizosphere microbes

| PRJNA903756 | ENA

Multi-omic (microbiome, metabolome, and immunome) study of peritumoral lymph nodes in gastric and colorectal cancer.

Project description:Interventions: Positive lymph nodes around gastric cancer:None;Negative lymph nodes around gastric cancer:None;Positive lymph nodes around colorectal cancer:None;Negative lymph nodes around colorectal cancer:None Primary outcome(s): Lymph nodes pathology diagnosis;Lymph nodes high-throughput sequencing;Metabonomics of lymph nodes;Immunomics of lymph nodes Study Design: Sequential

| 89365 | ecrin-mdr-crc

Next Generation RNA Sequencing - Delineation of Hepatic Transcriptome Governed by Liver Clock and Gut Microbes over Time

Project description:We report the application of bulk RNA-sequencing-based technology for high-throughput profiling to examine the individual and combinatorial effects of the liver circadian clock and gut microbes on the liver transcriptome over 24-hours. Principle Component Analysis demonstrated that functionality of the liver circadian clock is the primary driver of the hepatic transcriptome profile, and presence of microbes is the secondary driver. We identified a range of significantly oscillating transcripts within each experimental group using empirical_JTK_CYCLE, and revealed an overall increase in oscillating transcripts with both the loss of cuntional liver clock and gut microbes. Network analysis via Spearman correlation revealed that a broken liver clock results in increased connections and correlated transcripts only in the presence of gut microbes. Finally, we show by differential expression and gene set enrichment analysis that several key metabolic pathways, particularly carbohydrate and lipid metabolism, were significantly downregulated when the liver clock is broken, regardless of microbial status. This study demonstrates the complex contributions of the liver circadian clock and gut microbes in transcriptome programming, both over time and overall.

2022-06-06 | GSE184303 | GEO

AHT-ChIP-seq, a completely automated robotic protocol to perform chromatin immunoprecipitation in high-throughput

Project description:Transcription factor binding locations by ChIP followed by high throughput sequencing. To build and validate an automated Chromatin Immunoprecipitation and high throughput Illumina sequencing pipeline

2013-06-01 | E-MTAB-1579 | biostudies-arrayexpress

Project description:high-throughput sequencing

| PRJNA1096297 | ENA

Project description:High-throughput sequencing

| PRJNA589722 | ENA