Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens strain:(CLM) Puerto Rican in Puerto Rico

ABSTRACT: Whole genome sequencing of (CLM) Colombia from Medellin, Colombia HapMap population

PROVIDER: PRJNA60131 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR018196_1.fastq.gz	Fastqsanger.gz
	ERR018196_2.fastq.gz	Fastqsanger.gz
	ERR018197_1.fastq.gz	Fastqsanger.gz
	ERR018197_2.fastq.gz	Fastqsanger.gz
	ERR018198_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 662

Similar Datasets

Homo sapiens strain:(CLM) Puerto Rican in Puerto Rico

Project description:Exome sequencing of (CLM) Colombia from Medellin, Colombia HapMap population

| PRJNA60133 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:Whole genome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population

| PRJNA42573 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:Whole genome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood

| PRJNA177403 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:Exome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population

| PRJNA59817 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:CompleteGenomics sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood

| PRJNA194108 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:Exome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population. DNA for sequencing was extracted from whole blood

| PRJNA196422 | ENA

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:CompleteGenomics sequencing of (PJL) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood

| PRJNA194111 | ENA

Gene Expression data in whole blood from 121 Puerto Rican children

Project description:Puerto Ricans are a racially admixed population, that consists of European, African and Native American ancestrie. Understanding eQTL patterns in Puerto Ricans should help us elucidate both regulation of gene expression and disease causation in racially admixed populations in general, and in Hispanic subgroups in particular.

2014-11-08 | GSE63098 | GEO

Homo sapiens strain:(PUR) Puerto Rican in Puerto Rico

Project description:CompleteGenomics sequencing of (PUR) Puerto Rican in Puerto Rico

| PRJNA177966 | ENA

Gene expression profile of tumor-associated macrophages in human colorectal liver metastasis (CLM)

Project description:The immune landscape impacts outcome and therapeutic response in many tumor types, including colorectal liver metastases (CLM). It has long been known that in vitro polarized macrophages differ in morphology. Here we tested the hypothesis that morphology of tumor-associated macrophages (TAMs) in CLM represents a correlate of function with prognostic significance. Density and morphological metrics (area and perimeter) of TAMs were measured and correlated with clinic-pathological prognostic variables. While density of TAMs did not correlate with survival of CLM patients, cell area identified small and large macrophages that associated with 5-year disease-free survival rate of 27.8% and 0.2% respectively (P<0.001). RNA sequencing of morphologically distinct macrophages identified LXR/RXR as the most enriched pathway in large macrophages and upregulation of genes involved in cholesterol metabolism, phagocytosis and downregulation of the inflammatory program. These results support that accurate, morphometric characterization can serve as a simple readout of TAM diversity with prognostic significance.

2020-08-05 | GSE131353 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data