Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Plastic associated bacteria

PROVIDER: PRJNA601895 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12603942_1.fastq.gz	Fastqsanger.gz
	SRR12603942_2.fastq.gz	Fastqsanger.gz
	SRR12603943_1.fastq.gz	Fastqsanger.gz
	SRR12603943_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Project description:Plastic-associated bacteria isolated from an urban estuary in Brazil

| PRJNA987140 | ENA

Microarray analysis of V. cholerae genes differentially expressed in 12 h rabbit ileal loop mucus

Project description:The mucus and cell-associated bacteria were isolated as a single fraction from ileal loops twelve hours post inoculation by scraping the epithelial surface of the intestine with a disposable plastic cell scraper after the loops had been cut open and gently rinsed in PBS buffer to wash away remaining luminal fluid. The mucus gel/cell associated fraction was suspended in Trizol and frozen on dry ice. Total RNA, which includes RNA from the infecting bacteria and from the host (see below), was isolated from the thawed Trizol suspension, treated with DNaseI (Applied Biosystems, Austin, TX) and cleaned by using the RNeasy kit (Qiagen, Valencia, CA).

2010-09-29 | GSE24406 | GEO

Microarray analysis of V. cholerae genes differentially expressed in 8 h rabbit ileal loop mucus

Project description:The mucus and cell-associated bacteria were isolated as a single fraction from ileal loops eight hours post inoculation by scraping the epithelial surface of the intestine with a disposable plastic cell scraper after the loops had been cut open and gently rinsed in PBS buffer to wash away remaining luminal fluid. The mucus gel/cell associated fraction was suspended in Trizol and frozen on dry ice. Total RNA, which includes RNA from the infecting bacteria and from the host (see below), was isolated from the thawed Trizol suspension, treated with DNaseI (Applied Biosystems, Austin, TX) and cleaned by using the RNeasy kit (Qiagen, Valencia, CA).

2010-09-29 | GSE24405 | GEO

Marine Plastic Associated Biofilm

Project description:Marine Plastic Associated Biofilm Metagenome

| PRJNA773851 | ENA

Project description:Bacteria community on polycarbonate plastic biofilms

| PRJNA1059257 | ENA

Microarray analysis of V. cholerae genes differentially expressed in 8 h rabbit ileal loop mucus

2010-09-28 | E-GEOD-24405 | biostudies-arrayexpress

Microarray analysis of V. cholerae genes differentially expressed in 12 h rabbit ileal loop mucus

2010-09-28 | E-GEOD-24406 | biostudies-arrayexpress

Project description:landfill microbiome associated with plastic degradation

| PRJNA1086362 | ENA

Project description:Functional potential of plastic-associated microorganisms

| PRJEB41132 | ENA

Gut microbiota analysis after 3months probiotic-like bacteria or placebo treatment in subjects with metabolic syndrome

Project description:Background: Probiotic-like bacteria treatment has been described to be associated with gut microbiota modifications. Goal: To decipher if the effects of the tested probiotic-like bacteria are due to the bacteria itself or due to the effects of the bacteria on the gut microbiota. Methodology: In this study, gut microbiota has been analyzed from feces samples of subjects with metabolic syndrome and treated with one of the 2 tested probiotic-like bacteria or with the placebo during 3months.

| EGAS00001003585 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data