Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAseq of NRVMs infected with AdCryABR120G by the manipulation of Ube2v1 expression

ABSTRACT: RNAseq of NRVMs infected with AdCryABR120G by the manipulation of Ube2v1 expression

PROVIDER: PRJNA605478 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11044151_1.fastq.gz	Fastqsanger.gz
	SRR11044151_2.fastq.gz	Fastqsanger.gz
	SRR11044152_1.fastq.gz	Fastqsanger.gz
	SRR11044152_2.fastq.gz	Fastqsanger.gz
	SRR11044153_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

RNAseq of NRVMs infected with AdCryABR120G by the manipulation of Ube2v1 expression

Project description:Neonatal rat ventricle myocytes (NRVMs) were infected with CryABR120G adenovirus. Knockdown or overexpression of Ube2v1 was performed by siUbe2v1 transfection or AdUbe2v1 infection in CryABR120G-expressing cells. Total RNA was extracted from NRVMs of four groups: CTR (untreated control), R120G (AdCryABR120G infection), RSIV1 (AdCryABR120G infection with siUbe2v1 transfection), and RADV1 (coinfection with AdCryABR120G and AdUbe2v1), in triplicate, for gene expression profiling.

2020-08-10 | GSE144974 | GEO

CSF of Trypanosoma infected human RNAseq

Project description:CSF of Trypanosoma infected human RNAseq

| PRJEB18523 | ENA

Manipulation of Mir140 3p and 5p expression

Project description:Manipulation of Mir140 3p and 5p expression

| PRJNA681217 | ENA

RNAseq of nasal cells from volunteers experimentally infected with RSV

Project description:RNAseq of nasal cells from volunteers experimentally infected with RSV

2021-02-08 | GSE166161 | GEO

RNAseq of SARS-CoV-2-infected mice

Project description:RNAseq of SARS-CoV-2-infected mice

| PRJNA924771 | ENA

Manipulation experiments metagenomes

Project description:Manipulation experiments metagenomes

| PRJEB64576 | ENA

single-cell RNAseq on Klebsiella infected mouse lung

Project description:single-cell RNAseq on Klebsiella infected mouse lung

| PRJNA1061585 | ENA

Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

Project description:To understand the impact of murine rotavirus infection on mouse intestinal epithelial tissue, we isolated total intestinal epithelium from uninfected and infected C57Bl6J mice and performed single-cell RNAseq.

2021-10-04 | GSE169197 | GEO

Gene expression during biting behavior in zombie ants reflects the complexity of fungal pathogenic manipulation of ants

Project description:The biting behavior observed in Carpenter ants infected by the specialized fungus Ophiocordyceps unilateralis s.l. is an example of a complex host behavioral manipulation by parasite. Though parasitic manipulation of host behavior is generally assumed to be due to the parasite’s gene expression, few studies have set out to test this. We experimentally infected Carpenter ants to collect tissue from both parasite and host during the time period when manipulated biting behavior is experienced. Upon observation of synchronized biting, samples were collected and subjected to RNA-Seq analyses. We also sequenced and annotated the O. unilateralis s.l. genome as a reference for the fungal reads. Our mixed transcriptomics approach, together with a comparative genomics study, shows that the majority of the fungal genes that are up-regulated during manipulated biting behavior are unique to the O. unilateralis s.l. genome. This study furthermore reveals that the fungal parasite might be regulating immune- and neuronal stress responses in the host during manipulated biting, as well as impairing its chemosensory communication and causing apoptosis. Moreover, we found genes up-regulated during manipulation that putatively encode for proteins with reported effects on behavioral outputs, proteins involved in various neuropathologies, and proteins involved in the biosynthesis of secondary metabolites such as alkaloids.

2015-08-18 | GSE68176 | GEO

Boson HCV infected liver bulk RNASeq study

Project description:ACE2 is a receptor for the SARS-CoV-2 and differences in its expression may affect susceptibility to infection. In a genome-wide eQTL analysis using hepatitis C virus-infected liver tissue, we discovered that polymorphism in a type III interferon gene (IFNL4), which eliminates IFN-ÃŽÂ»4 production, is associated with a two-fold increase in ACE2 RNA expression. Conversely, among genes negatively correlated with ACE2 expression, IFN-signalling pathways were highly enriched and ACE2 was downregulated after IFN-ÃŽÂ± treatment.

| EGAS00001004996 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data