Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide temporal expression profiling of the DEGs (differentially expressed genes) in mouse stroke brain

ABSTRACT: Genome-wide temporal expression profiling of the DEGs (differentially expressed genes) in mouse stroke brain

PROVIDER: PRJNA612858 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11313958_1.fastq.gz	Fastqsanger.gz
	SRR11313958_2.fastq.gz	Fastqsanger.gz
	SRR11313959_1.fastq.gz	Fastqsanger.gz
	SRR11313959_2.fastq.gz	Fastqsanger.gz
	SRR11313960_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Genome-wide temporal expression profiling of the DEGs (differentially expressed genes) in mouse stroke brain

Project description:Purpose: The goal of this study is to examine the DEGs in the ispsi-lateral cerebral cortex of post-stroke brain using RNA-seq compared with control (sham).

2020-04-20 | GSE147060 | GEO

Differentially expressed genes (DEGs) analysis in control and hsa_circ_0004287 knockdown THP1-derived macrophages

Project description:Differentially expressed genes (DEGs) analysis in control and hsa_circ_0004287 knockdown THP1-derived macrophages

| PRJNA713406 | ENA

Differentially expressed lncRNAs profile between ischemic stroke patients and non-stroke patients in South China

Project description:Differentially expressed lncRNAs profile between ischemic stroke patients and non-stroke patients in South China

| PRJNA816528 | ENA

Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

Project description:Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

| PRJNA767696 | ENA

Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

Project description:Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

| PRJNA740304 | ENA

Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing

Project description:Background: Ischemic stroke is a disease with high rate of death and disability worldwide. This study investigated key circRNAs related to ischemic stroke. Methods: Three ischemic stroke patients and three healthy individuals were included in the current study to obtain the circRNA expression profiles by RNA sequencing. Through bioinformatic analysis, differentially expressed circRNAs (DEcircRNAs) were identified, and GO and pathway analyses for the host genes of DEcircRNAs were conducted. To further explore the functions of key circRNAs, a DEcircRNA-miRNA interaction network was constructed. Finally, the expression levels of selected circRNAs were validated with qRT-PCR. Results: A total of 736 DEcircRNAs were detected in ischemic stroke. Functional annotation of host genes of DEcircRNAs revealed several significantly enriched pathways, including Fc epsilon RI signaling pathway, B cell receptor signaling pathway, and T cell receptor signaling pathway. A circRNA-miRNA network, including 1544 circRNA-miRNA pairs, 456 circRNAs and 4 miRNAs, was obtained. The qRT-PCR results were largely in keeping with our RNA-seq data. Conclusion: The results of our study may help to elucidate the specific mechanism underlying ischemic stroke.

2021-06-24 | GSE178764 | GEO

Differentially expressed lncRNAs profile between ischemic stroke patients and non-stroke patients in South China

Project description:To evaluate lncRNA expression and changes in whole blood samples of patients during the acute cerebral ischemia phase, we have employed whole genome microarray expression profiling as a discovery platform to identify dysregulated genes to put forth predicted connections and functions of the differentially expressed lncRNAs.There were 1123 differentially expressed lncRNAs (Fold change ≥2.0, p<0.05) between stroke patients and the control group. Among these, 371 lncRNAs were upregulated, and 752 lncRNAs were downregulated. Expression of nine lncRNAs (ENST00000452599, ENST00000527450, ENST00000608826, T013651, T029143, T131416, T294865, ENST00000530525 and T058035) from this signature was quantified in the same RNA samples by real-time PCR, confirming our gene chip performance.

2022-03-20 | GSE198710 | GEO

Differentially expressed genes (DEGs) analysis in control and melatonin treated human coronary artery endothilial cells (HCAECs).

Project description:Differentially expressed genes (DEGs) analysis in control and melatonin treated human coronary artery endothilial cells (HCAECs).

| PRJNA760433 | ENA

RNA-sequencing analysis of differentially expressed genes (DEGs) induced by STC2 overexpression in colorectal cancer cells

Project description:RNA-sequencing analysis of differentially expressed genes (DEGs) induced by STC2 overexpression in colorectal cancer cells

| PRJNA478926 | ENA

Transcriptome analysis of differentially expressed genes (DEGs) induced by Sporisorium reilianum between the two lines of ZmWRKY-KO and B73

Project description:The 7d-mesocotyls of wild type B73 and its ZmWRKY53-KO counterparts were treated with or without S. reilianum for RNA sequencing.The differentially expressed genes (DEGs) were identified based on the criteria of fold-change > 2 and P < 0.05. Under normal conditions, we found 1,025 downregulated and 599 upregulated differentially expressed genes (DEGs) in the ZmWRKY53-KO plant compared to its wild-type B73 counterpart. Under S. reilianum-infected conditions, 1,041 downregulated and 1,268 upregulated DEGs were identified in the ZmWRKY53-KO plant.

2024-10-04 | GSE278385 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data