Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

NrfA sequences from soils and manure

ABSTRACT: nrfA sequences from soils and manure Raw sequence reads

PROVIDER: PRJNA613230 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11343700_1.fastq.gz	Fastqsanger.gz
	SRR11343700_2.fastq.gz	Fastqsanger.gz
	SRR11343701_1.fastq.gz	Fastqsanger.gz
	SRR11343701_2.fastq.gz	Fastqsanger.gz
	SRR11343702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 220

Similar Datasets

16S rRNA and Metagenomic Sequences from Manure-Amended Agricultural Soils

Project description:16S rRNA and Metagenomic Sequences from Manure-Amended Agricultural Soils

| PRJNA1182752 | ENA

qz nrfA cc

Project description:qz nrfA cc Raw sequence reads

| PRJNA903770 | ENA

nrfa global sdiment

Project description:nrfa global sediment Raw sequence reads

| PRJNA626481 | ENA

Pig manure and chicken manure

Project description:Pig manure and chicken manure Raw sequence reads

| PRJNA730213 | ENA

Xuzhou Fertilized soils AOB amoA sequences 12 samples

Project description:Xuzhou Fertilized soils AOB amoA sequences 12 samples Raw sequence reads

| PRJNA718000 | ENA

Steroids originating from bacterial bile acid degradation affect Caenorhabditis elegans and indicate potential risks for the fauna of manured soils

Project description:Bile acids are steroid compounds from the digestive tracts of vertebrates that enter agricultural environments in unusual high amounts with manure. Bacteria degrading bile acids can readily be isolated from soils and waters including agricultural areas. Under laboratory conditions, these bacteria transiently release steroid compounds as degradation intermediates into the environment. These compounds include androstadienediones (ADDs), which are C19-steroids with potential hormonal effects. Experiments with Caenorhabditis elegans showed that ADDs derived from bacterial bile acid degradation had effects on its tactile response, reproduction rate, and developmental speed. Additional experiments with a deletion mutant as well as transcriptomic analyses revealed that these effects might be conveyed by the putative testosterone receptor NHR-69. Soil microcosms showed that the natural microflora of agricultural soil is readily induced for bile acid degradation accompanied by the transient release of steroid intermediates. Establishment of a model system with a Pseudomonas strain and C. elegans in sand microcosms indicated transient release of ADDs during the course of bile acid degradation and negative effects on the reproduction rate of the nematode. This proof-of-principle study points at bacterial degradation of manure-derived bile acids as a potential and so-far overlooked risk for invertebrates in agricultural soils.

2019-02-08 | GSE126214 | GEO

manure metagenome

Project description:swine manure Raw sequence reads

| PRJNA315350 | ENA

swine manure

Project description:swine manure Raw sequence reads

| PRJNA824161 | ENA

manure metagenome

Project description:manure metagenome Raw sequence reads

| PRJNA407250 | ENA

Cow manure

Project description:Cow manure Raw sequence reads