Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Restriction Site-Associated DNA (RAD) sequencing of Coconut Leaf Beetle Brontispa longissima (Gestro) in China

PROVIDER: PRJNA613374 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11348700_1.fastq.gz	Fastqsanger.gz
	SRR11348700_2.fastq.gz	Fastqsanger.gz
	SRR11348701_1.fastq.gz	Fastqsanger.gz
	SRR11348701_2.fastq.gz	Fastqsanger.gz
	SRR11348702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 101

Similar Datasets

Brontispa longissima isolate:larvae | breed:Brontispa longissima

Project description:Brontispa longissima isolate:larvae | breed:Brontispa longissima Genome sequencing

| PRJNA699109 | ENA

Brontispa longissima

Project description:Brontispa longissima overview

| PRJNA701097 | ENA

Project description:Genome of Brontispa longissima

| PRJNA1085852 | ENA

RAD methods paper - Threespine Stickleback Lateral Plate Mapping

Project description:Restriction site Associated DNA (RAD) tags are a genome-wide representation of every site of a particular restriction enzyme by short DNA tags. Most organisms segregate large numbers of DNA sequence polymorphisms that disrupt restriction sites, which allow RAD tags to serve as genetic markers spread at a high-density throughout the genome. Here, we demonstrate the applicability of RAD markers for both individual and bulk-segregant genotyping. First, we show that these markers can be identified and typed on pre-existing microarray formats. Second, we present a method that uses RAD marker DNA to rapidly produce a low-cost microarray genotyping resource that can be used to efficiently identify and type thousands of RAD markers. We demonstrate the utility of the former approach by using a tiling path array for the fruit fly to map a recombination breakpoint, and the latter approach by creating and utilizing an enriched RAD marker array for the threespine stickleback. The high number of RAD markers enabled localization of a previously identified region, as well as a second novel region also associated with the lateral plate phenotype. Taken together, our results demonstrate that RAD markers, and the method to develop a RAD marker microarray resource, allow high-throughput, high-resolution genotyping in both model and non-model systems. Keywords: microarray genotyping

2007-01-24 | GSE5773 | GEO

Brontispa longissima

Project description:Brontispa longissima Raw sequence reads

| PRJNA326699 | ENA

Project description:The complete mitochondrial genome of Brontispa longissima

| PRJNA719464 | ENA

Syngnathus schlegeli

Project description:Restriction site-associated DNA (RAD) sequencing of Syngnathus schlegeli

| PRJNA490603 | ENA

Project description:Restriction site-associated DNA sequencing (RAD-seq) of Pelodiscus sinensis

| PRJNA680995 | ENA

Gasterosteus aculeatus aculeatus