Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli

ABSTRACT: Comparison of Whole transcriptome sequence of Clinical E.coli Strain (EC555)-with WTS of an antibiotic agent namely PPEF treated EC555

PROVIDER: PRJNA616186 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11486227_1.fastq.gz	Fastqsanger.gz
	SRR11486227_2.fastq.gz	Fastqsanger.gz
	SRR11486228_1.fastq.gz	Fastqsanger.gz
	SRR11486228_2.fastq.gz	Fastqsanger.gz
	SRR11486229_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Escherichia coli strain:EC555

Project description:Comparison of Whole Genome sequence (WGS)of a Clinical E.coli Strain(EC555)-with the WGS of same strain treated with a very potent antibacterial agent PPEF

| PRJNA616230 | ENA

genome-wide measurement of mRNA lifetime in Escherichia coli

Project description:We measured the mRNA abundance in E.coli using RNAseq to calculate mRNA lifetimes. The data is used in support of a larger paper on the proteome and transcriptome of E.coli. Comparison of mRNA abundance over time, after the addition of transcription inhibitor, rifampicin. Center: Harvard University

2010-07-30 | E-GEOD-21341 | biostudies-arrayexpress

Escherichia coli

Project description:High Fosfomycin MIC in clinical E.coli isolates

| PRJNA942108 | ENA

Stokes2020 - Antibiotics discovery using deep learning approach.

Project description:Based on a simple E.coli growth inhibition assay, the authors trained a model capable of identifying antibiotic potential in compounds structurally divergent from conventional antibiotic drugs. One of the predicted active molecules, Halicin (SU3327), was experimentally validated in vitro and in vivo. Model Type: Predictive machine learning model. Model Relevance: Probability that a compound inhibits E.coli growth. Model Encoded by: Miquel Duran-Frigola(Ersilia) Metadata Submitted in BioModels by: Zainab Ashimiyu-Abdusalam Implementation of this model code by Ersilia is available here: https://github.com/ersilia-os/eos4e40

2024-04-22 | MODEL2404080001 | BioModels

genome-wide measurement of mRNA lifetime in Escherichia coli

Project description:We measured the mRNA abundance in E.coli using RNAseq to calculate mRNA lifetimes. The data is used in support of a larger paper on the proteome and transcriptome of E.coli.

2010-07-30 | GSE21341 | GEO

Escherichia

Project description:National surveillance of clinical E.Coli resistance in companion animals

| PRJNA666081 | ENA

Escherichia coli

Project description:Comparison of transcriptome of E. coli K-12 wild type strain with transcriptome of E. coli K-12-R, highly tolerant to PPEF an antibacterial agent.

| PRJNA623259 | ENA

Escherichia coli O157:H7 : Control vs. PEG8000 treated

Project description:Transcriptional profiling of E.coli O157:H7 cells comparing control untreated cells with PEG8000treated cells Two-condition experiment, Control vs. PEG8000. Biological replicates: 1 control, 1 treated.

2011-04-01 | E-GEOD-28312 | biostudies-arrayexpress

Early life antibiotic treatment enhances the pathogenicity of CD4+ T cells curing intestinal inflammation

Project description:Comparison between splenic naïve CD4 T cells from antibiotic treated and non-treated C57BL/6 mice 8-10 weeks after birth. The antibiotic treatement occurred for the first 3 weeks of life until weaning.

2016-12-13 | GSE92282 | GEO

Escherichia coli

Project description:Comparison of Whole Genome sequence of E. coli K-12 wild type strain with WGS of E. coli K-12-R, highly tolerant to PPEF an antibacterial agent.

| PRJNA616205 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data