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Glycine max strain:Sinorhizobium fredii CCBAU45436 | cultivar:C08

ABSTRACT: RNAseq of Glycine max C08 inoculated with Sinorhizobium fredii CCBAU45436

PROVIDER: PRJNA626514 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR11622654_1.fastq.gz	Fastqsanger.gz
	SRR11622654_2.fastq.gz	Fastqsanger.gz
	SRR11622655_1.fastq.gz	Fastqsanger.gz
	SRR11622655_2.fastq.gz	Fastqsanger.gz
	SRR11622656_1.fastq.gz	Fastqsanger.gz

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Transcriptome data of compatible soybean host inoculated with Sinorhizobium fredii with variants of NopP and NopI

Project description:Nodulation Outer Protein P (NopP) and NopI of the type 3 secretion system (T3SS) of the rhizobium determine host specificity. Sinorhizobium fredii CCBAU25509 (R2) and CCBAU45436 (R4) have different NopP and NopI variants, affecting their respective symbiotic compatibilities with the cultivated soybean C08 and the wild soybean W05. Swapping the NopP variants between R2 and R4 has been shown to switch their compatibility with C08 with the rj2/Rfg1 genotype. To understand the effects of Nops on host compatibility, analyses on the transcriptomic data of W05 roots and nodules inoculated with S. fredii strains containing Nop variants uncovered many differentially expressed genes related to nodulation and nodule functions, providing important information on the effects of Nops on hosts and nodules.

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Sinorhizobium fredii strain:CCBAU45436/CCBAU25509

Project description:Sinorhizobium fredii strain:CCBAU45436/CCBAU25509 Raw sequence reads

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