Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: MinION DNA barcoding of five representative species

PROVIDER: PRJNA627087 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11581740_1.fastq.gz	Fastqsanger.gz
	SRR11581741_1.fastq.gz	Fastqsanger.gz
	SRR11581742_1.fastq.gz	Fastqsanger.gz
	SRR11581743_1.fastq.gz	Fastqsanger.gz
	SRR11581744_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

MinION barcoding

Project description:MinION DNA barcoding wildlife samples

| PRJEB36404 | ENA

MinION DNA barcoding of nematodes

Project description:DNA barcoding of nematodes using the MinION

| PRJEB37489 | ENA

Effect of aging on mitochondrial gene expression using C57BL/6N liver mitochondria

Project description:To investigate the effect of aging on mitochondrial gene expression we isolated liver mitochondria from 4 12-week and 4 65-week C57BL/6N WT mice. We then isolated RNA and prepared the barcoded library using PCR-cDNA Barcoding Kit SQK-PCB109 and ran it on MinIOn R9.4.1 Flow cells.

2022-07-17 | GSE208177 | GEO

Metazoa

Project description:Takeaways from mobile DNA barcoding with BentoLab and MinION

| PRJNA657385 | ENA

Project description:Ten representative species transcriptomes assemblies covering five subfamilies of Orchidaceae assembly

| PRJNA289432 | ENA

COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics

Project description:Species identification of fragmentary bones remains a challenging task in archeology and forensics. A species identification method for such fragmentary bones that has recently attracted interest is the use of bone collagen proteins. We developed a method similar to DNA barcoding that reads collagen protein sequences in bone and automatically determines the species by performing sequence database searches. We tested our method using bone samples from 30 vertebrate species ranging from mammals to fish.

2023-12-14 | PXD045402 | Pride

gut metagenome

Project description:DNA barcoding of invertebrates in primate species

| PRJNA241264 | ENA

Protein sequence comparison of human and non-human primate tooth proteomes

Project description:In the context of human evolution, the study of proteins may overcome the limitation of the high degradation of ancient DNA over time for providing biomolecular information useful to precise the phylogeny of hominid taxa. Here, we have analysed and compared the tooth proteome of five extant primates (human, gorilla, chimpanzee, orangutan and baboon) using a shotgun proteomics approach. Twenty five proteins were shared by the five datasets, and may be considered as the most representative tooth proteins with a chance of being retrieved from older samples. Some of them were identified by peptides specific to the species, thus allowing to draw up a combinatory panel of peptides with species signature that could be helpful for the taxonomic characterization of ancient samples

2020-11-17 | PXD018933 | Pride

Identification of Genomic Safe Harbors in the Anhydrobiotic Cell Line, Pv11

Project description:Genomic safe harbors (GSHs) are utilized as an ideal integration site for generating transgenic organisms and cells. Discovery of GSHs is one of the crucial factors for the advancement of basic and applied biology in the species. Such GSHs were discovered in Pv11 (Polypedilum vanderplanki) cell line, which can survive extreme desiccation. To identify the integration sites, high-molecular-weight genomic DNAs were extracted. The DNA libraries were prepared and sequenced with a Nanopore MinION sequencer. In the way to confirm that GSHs loci are localized in open chromatin regions we prepared ATAC-seq libraries, which were sequenced in Illumina HiSeq2500.

2022-03-01 | GSE190481 | GEO

Project description:DNA barcoding for species identification of moss-dwelling invertebrates

| PRJNA1088450 | ENA