Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptococcus hyovaginalis strain:CQ2B30

ABSTRACT: Streptococcus hyovaginalis strain:CQ2B30 Genome sequencing and assembly

PROVIDER: PRJNA627815 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Streptococcus hyovaginalis strain:CQ2B2

Project description:Streptococcus hyovaginalis strain:CQ2B2 Genome sequencing and assembly

| PRJNA627806 | ENA

Streptococcus hyovaginalis strain:LY2204

Project description:Streptococcus hyovaginalis strain:LY2204 Genome sequencing and assembly

| PRJNA1164143 | ENA

Streptococcus hyovaginalis

Project description:Streptococcus hyovaginalis overview

| PRJNA185946 | ENA

Streptococcus hyovaginalis DSM 12219

Project description:Streptococcus hyovaginalis DSM 12219

| PRJNA185666 | ENA

Schaalia hyovaginalis strain:DSM 10695 | isolate:DSM 10695

Project description:Schaalia hyovaginalis DSM 10695 genome sequencing

| PRJNA621368 | ENA

Rgg-dependent transcriptional regulation in SF370 Streptococcus pyogenes strain

Project description:Rgg-dependent transcriptional regulation in SF370 Streptococcus pyogenes strain was analyzed during post-exponential phase of growth Keywords: rgg mutant

2008-02-01 | GSE7335 | GEO

Transcription start site analysis of Streptococcus agalactiae strain BM110

Project description:Streptococcus agalactiae, also known as Group B streptococcus, emerged in the 1960s as a leading cause of septicemia and meningitis in neonates. It is also an increasing cause of infections in adults with underlying diseases. To characterize transcription start sites (TSS) in the hypervirulent ST17 lineage (strain BM110) we used a differential RNA-seq strategy, based on selective Tobacco Acid Pyrophosphatase (TAP) treatment and adapter ligation, which differentiates primary transcripts and processed RNAs

2021-08-23 | GSE158048 | GEO

Differential expression of genes in Streptococcus sanguinis nox mutant and its complemented strain

Project description:Transcriptional profiling of Streptococcus sanguinis nox mutant and its complemented strain compared to the wild-type SK36.

2015-05-04 | GSE68492 | GEO

Streptococcus pneumoniae strain D39V were grown in six different conditions, mimicking the host niches

Project description:Streptococcus pneumoniae strain D39V were grown in six different conditions, mimicking the host niches

2021-12-14 | GSE128366 | GEO

Redefining the sRNA transcriptome of Streptococcus pneumoniae serotype 2 strain D39

Project description:Streptococcus pneumoniae (pneumococcus) is a major human respiratory pathogen and the leading cause of bacterial pneumonia worldwide. Small regulatory RNAs (sRNAs), which often act by post-transcriptionally regulating gene expression, have been shown to be crucial for the virulence of S. pneumoniae and other bacterial pathogens. Over 170 putative sRNAs have been identified in S. pneumoniae TIGR4 strain (serotype 4) through transcriptomic studies, and a subset of these sRNAs have been further implicated in regulating pneumococcal pathogenesis. However, there was little overlap in the sRNAs identified among these studies, which indicated that the approaches used for sRNA identification were not sufficiently sensitive and robust and that there were likely many more undiscovered sRNAs encoded in the S. pneumoniae genome. Here, we sought to comprehensively identify sRNAs in Avery's virulent S. pneumoniae strain D39 using two independent RNA-seq based approaches. We developed an unbiased method for identifying novel sRNAs from bacterial RNA-seq data and have further tested the specificity of our analysis program towards identifying sRNAs encoded by both strains D39 and TIGR4. Interestingly, the genes for 15% of the putative sRNAs identified in strain TIGR4 including ones previously implicated in virulence were not present in strain D39 genome suggesting that the differences in sRNA repertoires between these two serotypes may contribute to their strain-specific virulence properties. Finally, this study has identified 67 new sRNA candidates in strain D39, 28 out of which have been further validated, raising the total number of sRNAs that have been identified in strain D39 to 112.

2019-03-11 | GSE123437 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data