Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: New approaches to species delimitation and population structure of corals: two case studies using ultraconserved elements and exons

PROVIDER: PRJNA627900 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11605000_1.fastq.gz	Fastqsanger.gz
	SRR11605000_2.fastq.gz	Fastqsanger.gz
	SRR11605001_1.fastq.gz	Fastqsanger.gz
	SRR11605001_2.fastq.gz	Fastqsanger.gz
	SRR11605002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 209

Similar Datasets

Project description:Ultraconserved elements and conserved exons of amazonian birds

| PRJNA476145 | ENA

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements

Project description:The manuscript by D. Licastro and colleagues “Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements” presents an overview of experimental and computational approaches employed by the authors to perform a multi-facet characterization of ultraconserved elements (UCEs). The authors present an interesting analysis where they investigate the transcription of UCEs in mouse development at different stages by conductin an microarray experiment. Some of these results are further verified by RT-PCR. 12 Samples, 4 groups 3 samples per group.

2010-06-16 | E-GEOD-19371 | biostudies-arrayexpress

Passeriformes sp.

Project description:Targeted enrichment of ultraconserved elements and exons from suboscine passerines

| PRJNA655842 | ENA

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements

2010-06-16 | GSE19371 | GEO

The contribution of Alu exons to the human proteome

Project description:Alu elements are major contributors to lineage-specific new exons in primate and human genomes. Recent studies indicate that some Alu exons have high transcript inclusion levels or tissue-specific splicing profiles, and may play important regulatory roles in modulating mRNA degradation or translational efficiency. However, the contribution of Alu exons to the human proteome remains unclear and controversial. The prevailing view is that exons derived from young repetitive elements, such as Alu elements, are restricted to regulatory functions and have not had adequate evolutionary time to be incorporated into stable, functional proteins. We adopt a proteotranscriptomics approach to systematically assess the contribution of Alu exons to the human proteome. Using RNA sequencing, ribosome profiling and proteomics data from human tissues and cell lines, we provide evidence for the translational activities of Alu exons and the presence of Alu exon derived peptides in human proteins. These Alu exon peptides represent species-specific protein differences between primates and other mammals, and in certain instances between humans and closely related primates. In the case of the RNA editing enzyme ADARB1, which contains an Alu exon peptide in its catalytic domain, RNA sequencing analyses of A-to-I editing demonstrate that both the Alu exon skipping and inclusion isoforms encode active enzymes. The Alu exon derived peptide may fine tune the overall editing activity and, in limited cases, the site selectivity of ADARB1 protein products. Our data indicate that Alu elements have contributed to the acquisition of novel protein sequences during primate and human evolution.

2015-12-10 | GSE65999 | GEO

Crustacea, Malacostraca

Project description:A new probe set to target ultraconserved elements for Malacostraca

| PRJNA988117 | ENA

Project description:Ultraconserved elements of Pachycephalidae whistlers

| PRJNA774817 | ENA

Project description:Ultraconserved elements for parachuting Geckos

| PRJNA594237 | ENA

Project description:Ultraconserved Elements of Synallaxis rutilans

| PRJNA758374 | ENA

Project description:Case studies of microbial community structure on urban river

| PRJNA973203 | ENA