Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmonella enterica subsp. enterica serovar Enteritidis str. 22558

ABSTRACT: Salmonella enterica subsp. enterica serovar Enteritidis str. 22558

PROVIDER: PRJNA62797 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR518758.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Genomic comparisons of Salmonella enterica serovar Enteritidis isolates

Project description:Comparative genomic hybridization of a temporally and locally diverse set of S. enterica ssp I serovar Enteritidis isolates, and some closely related serovar Dublin and Gallinarum strains, to the sequenced Enteritidis PT4 Keywords: other

2005-08-06 | GSE2242 | GEO

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

Project description:Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus.

2013-03-15 | GSE45178 | GEO

Novel insights into the oxidative stress response of Salmonella enterica serovar Enteritidis revealed by the next generation sequencing approach

Project description:We report our results of RNA-seq analysis on the wild type Salmonella enterica serovar Enteritidis with and without H2O2 treatment

2020-07-31 | GSE155479 | GEO

Transcription profiling of wild type, waaG mutant and rfaH mutant Salmonella enterica serovar Enteritidis PT4 and serovar Typhimurium to investigate live-attenuated vacine candidates

Project description:Effect of mutation of rfaH on gene expression in Salmonella enterica serovar Enteritidis PT4 and Salmonella enterica serovar Typhimurium 4/74

2006-11-13 | E-MEXP-844 | biostudies-arrayexpress

Genomic comparisons of Salmonella enterica serovar Enteritidis isolates

2005-08-06 | E-GEOD-2242 | biostudies-arrayexpress

Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

2013-03-15 | E-GEOD-45178 | biostudies-arrayexpress

Global gene expression analysis of Salmonella enterica serovar Enteritidis during growth in whole egg

Project description:Even though the incidence of salmonellosis in humans has decreased over the last years, Salmonella spp. are still a leading cause of foodborne outbreaks in Europe (Anon., 2014). Of more than 2500 different serovars of Salmonella enterica, S. enterica serovar Enteritidis (S. Enteritidis) is the most frequently reported serovar in relation to food borne disease, and egg and egg products are the most important vehicles (Anon., 2014). It has recently been shown that S. Enteritidis is superior to other serovars tested regarding survival in egg white, which may explain why many egg borne outbreaks are caused by this serovar (De Vylder et al., 2013). The genetic background for this apparent better adaptation to survival in egg is only partially known. The aim of this work was to carry out gene expression analysis in order to understand how S. Enteritidis adapts to growth in the hostile environment of egg. This study analyzed gene expression of this bacterium during growth in whole egg, and whether highly expressed genes were essential for the growth. High quality RNA was extracted from S. Enteritidis using an improved modified RNA-extraction protocol. Global gene expression during growth in whole egg was compared to growth in LB-medium using DNA array method. Twenty-six genes were significantly upregulated during growth in egg; these belonged to amino acids biosynthesis, di/oligopeptide transport system, biotin synthesis, ferrous iron transport system, and type III secretion system. Significant downregulation of 15 genes related to formate hydrogenlyase (FHL) and trehalose metabolism was observed. The results suggested that S. Enteritidis is starved for amino-acids, biotin and iron when growing in egg.

2016-03-04 | E-MTAB-4521 | biostudies-arrayexpress

Transcriptome of DTAC-resistant Salmonella Enteritidis

Project description:Screen for differences in gene expression between a parental Salmonella enterica serovar Enteritidis strain (ATCC4931) and an adapted strain with increased resistance to the widely used antimicrobial sanitizer dodecyltrimethylammonium chloride (DTAC)

2012-12-31 | GSE41606 | GEO

Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17

Project description:Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17

| PRJNA66669 | ENA

Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1791

Project description:Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1791

| PRJNA52517 | ENA