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Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy II

ABSTRACT: Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy II

PROVIDER: PRJNA629060 | ENA |

REPOSITORIES: ENA

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Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy I

Project description:Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy I

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Maternal whole blood expression changes with gestational age and labor in normal pregnancy [array]

Project description:Maternal plasama colected longitudinally were profiled using Affymetrix Human Transcriptome Arrays to evaluate changes with gestational age and with labor in normal pregnancy.

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Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy I

Project description:Maternal whole blood colected longitudinally were profiled using Affymetrix Human Transcriptome Arrays to evaluate changes with gestational age and with labor in normal pregnancy. This is a re-analysis of GSE113809, with additional metadata and different summarization of gene expression at ENTREZ ID level instead of Transcript Cluster as in the original submission. LMP is the date at the last menstrual period. Oper_LMP is the date at the last menstrual period with eventual adjustment based on ultrasound determination. Gestational age (GA) (weeks) is defined as (Date at sample - Oper_LMP)/7. For control pregnancies, SubGroup defines those with spontaneous labor at term (TL) as opposed with those delivered by cesarean section (TNL). Train is 1 if the sample was used in sub-challenge 1 in the training set as opposed to test set (0). D2 is 1 if the sample was used in the 2 interval prediction scenario, and if yes, it was assigned to the interval given by column D2Interval. D3 is 1 if the sample was used in the 3 interval prediction scenario, and if yes, it was assigned to the interval given by column D3Interval. DiagnosisGA is the gestational age at diagnosis with any disease indicated by the Group variable, and it is set to NA for normal pregnancies.

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Sequencing based maternal whole blood expression changes with gestational age and labor in normal pregnancy

Project description:Maternal plasama colected longitudinally were profiled using paired-end Illumina RNA-Seq with globin reduction to evaluate changes with gestational age and with labor in normal pregnancy.

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Targeted sequencing based maternal whole blood expression changes with gestational age and labor in normal pregnancy

Project description:Maternal plasama colected longitudinally were profiled using targeted sequencing (DriverMap™) (https://www.cellecta.com) to evaluate changes with gestational age and with labor in normal pregnancy.

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Maternal whole blood transcriptomics to assess changes with gestational age in normal pregnancy II

Project description:Maternal whole blood colected longitudinally were profiled using Affymetrix Human Transcriptome Arrays . This is a re-analysis of GSE121974, with additional metadata and different summarization of gene expression at ENTREZ ID level instead of Transcript Cluster as in the original submission. LMP is the date at the last menstrual period. Oper_LMP is the date at the last menstrual period with eventual adjustment based on ultrasound determination. Gestational age (GA) (weeks) is defined as (Date at sample - Oper_LMP)/7. For control pregnancies, SubGroup defines those with spontaneous labor at term (TL) as opposed with those delivered by cesarean section (TNL). Train is 1 if the sample was used in sub-challenge 1 in the training set as opposed to test set (0). D2 is 1 if the sample was used in the 2 interval prediction scenario, and if yes, it was assigned to the interval given by column D2Interval. D3 is 1 if the sample was used in the 3 interval prediction scenario, and if yes, it was assigned to the interval given by column D3Interval. DiagnosisGA is the gestational age at diagnosis with any disease indicated by the Group variable, and it is set to NA for normal pregnancies.

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Maternal whole blood expression changes with gestational age and labor in normal pregnancy

Project description:Maternal whole blood expression changes with gestational age and labor in normal pregnancy

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Project description:Maternal whole blood expression changes with gestational age and labor in normal pregnancy [array]

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Project description:Sequencing based maternal whole blood expression changes with gestational age and labor in normal pregnancy

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