Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cenchrus caudatus

ABSTRACT: Pennisetum Genome sequencing

PROVIDER: PRJNA632455 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11800371_1.fastq.gz	Fastqsanger.gz
	SRR11800371_2.fastq.gz	Fastqsanger.gz
	SRR11800372_1.fastq.gz	Fastqsanger.gz
	SRR11800372_2.fastq.gz	Fastqsanger.gz
	SRR11800373_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Cenchrus flaccidus

Project description:Pennisetum flaccidum Genome sequencing and assembly

| PRJNA689090 | ENA

Cenchrus americanus strain:7042S

Project description:Pennisetum glaucum genome sequencing project

| PRJNA42845 | ENA

Cenchrus purpureus

Project description:Pennisetum purpureum Transcriptome

| PRJNA330748 | ENA

Cenchrus purpurascens breed:Pennisetum alopecuroides

Project description:Cenchrus purpurascens breed:Pennisetum alopecuroides Genome sequencing

| PRJNA1000771 | ENA

Cenchrus violaceus cultivar:PI564586

Project description:Transcriptomic changes in Pennisetum violaceum in response to salt and drought stress

| PRJNA282366 | ENA

Naemorhedus caudatus

Project description:Naemorhedus caudatus Genome sequencing

| PRJNA361026 | ENA

Cenchrus americanus cultivar:J-2454

Project description:Pennisetum glaucum (L.) R. Br. (Pearl Millet) transcriptome under control and drought condition

| PRJNA385901 | ENA

Lignin production associated genes in Cenchrus purpueus

Project description:This study aims to reveal genes related to lignin production in Cenchrus purpureus through RNA-Seq. This species is widely used as forrage for cattle, and for the last years, due to its high biomass yield, has been considered as source to lignocellulosic ethanol. Given those two importances, lignin is a molecule related to low digestibility in cattle and recalcitrance in biofuel production. Eight samples were chosen from previous lignin production and forage quality data; four samples had low lignin production, and four had high lignin production. The highest nodes were collected for RNA extraction using TRIzol reagent, following Jordon-Thaden et a;. (2015) protocol. The cDNA library preparation was generated according to Illumina TruSeq Stranded mRNA Sample Prep kit protocol, and RNA sequencing was performed using HiSeq 2500 sequencer. Quality control was measured by FastQC software v 0.11.8. The sequenced reads were aligned to Cenchrus purpureus genome through STAR software v. 2.5.2b (Dobin et al., 2012). After that, the transcriptome was assembled using Stringtie v 2.0.4 software (Pertea et al., 2015). Salmon v 0.7.2 software (Patro et al., 2017) was used to quantify the sequenced reads. The DEG was identified using DESeq2 package, and genes functions were annotated through Trinotate software (Bryant et al., 2017). In total, approximately 130 million reads were sequenced. The final assembled transcriptome was formed by 101,169 transcripts. The differential expressed genes analysis revealed 52 significatively genes. Here, we highlighted genes related to sterol, L-serine and terpene biosynthetic process.

2021-10-01 | GSE174718 | GEO

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Cenchrus purpureus

Project description:Cenchrus purpureus Genome sequencing and assembly

| PRJNA607017 | ENA