Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The transcriptomic profile of wild-type and Sur7-deletion Beauveria bassiana grown on nutrient-distinct media

ABSTRACT: The transcriptomic profile of wild-type and Sur7-deletion Beauveria bassiana grown on nutrient-distinct media

PROVIDER: PRJNA633494 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11806500_1.fastq.gz	Fastqsanger.gz
	SRR11806500_2.fastq.gz	Fastqsanger.gz
	SRR11806501_1.fastq.gz	Fastqsanger.gz
	SRR11806501_2.fastq.gz	Fastqsanger.gz
	SRR11806502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

The transcriptomic profile of wild-type and Sur7-deletion Beauveria bassiana grown on nutrient-distinct media

Project description:We report the application of RNA sequencing with Next Generation Sequencing technology for high-throughput status of transcripts in wild-type and Sur7-deletion Beauveria bassiana grown on nutrient-sufficient media (SDAY) or nutrient-limiting media (CDA), respectively

2020-05-19 | GSE150749 | GEO

Transcriptomic analysis of LaeA and LaeB deletion strains in fungus Beauveria bassiana

Project description:Transcriptomic analysis of LaeA-deletion and overexpression LaeB in LaeA deletion strains in fungus Beauveria bassiana Examination of differential gene expressions by Beauveria bassiana wild type, LaeA-deletion and overexpression LaeB in LaeA deletion strains in fungus Beauveria bassiana

2013-12-05 | E-GEOD-52995 | biostudies-arrayexpress

Downstream targets of Beauveria bassiana gelsolin during blastospore development

Project description:Comparative proteomics, between the wild type and delta BbGel1 mutant strains grown in liquid media, is performed to explore the downstream targets of Beauveria bassiana gelsolin during balstospore development .

2016-09-26 | PXD003617 | Pride

Analyzing downstream targets of Beauveria bassiana gelsolin duing conidal development

Project description:Comparative proteomics, between the wild type and delta BbGel1 strains grown on the surface of culture media, is performed to explore the downstream targets of Beauveria bassiana gelsolin during conidiation .

2016-09-26 | PXD003618 | Pride

The transcriptomic profile of wild-type and Ubr1-deletion Beauveria bassiana cultured in germination medium

Project description:We report the application of RNA sequencing with Next Generation Sequencing technology for high-throughput status of transcripts in wild-type and ubr1-deletion Beauveria bassiana cultured in germination media (GM).

2021-10-01 | GSE184996 | GEO

Beauveria bassiana

Project description:Beauveria bassiana Transcriptome

| PRJNA385087 | ENA

Genome sequencing and transcriptional profiling of the insect biocontrol fungus Beauveria bassiana

Project description:Insect pathogenic fungus Beauveria bassiana in one of the best studied insect biocontrol fungus, which infects insects by cuticle penetration. After breaking the cuticles, the fungus will propagate in insect hemocoel and kill insect hosts. It has also been found that the mycelia of B. bassiana can penetrate plant tissues to reach insect inside plant, e.g. corn borer (Ostrinia furnacalis), but do not cause damage to plants. The mechanism of fungal physiological plasticity is poorly understood. To accompany our genome sequencing work of B. bassiana strain ARSEF 2860, fungal transcriptional responses to different niches were studied using an Illumina RNA_seq technique. To examine fungal response to insect cuticle, conidia were inoculated on locust hind wings for 24 hours before used for RNA extraction. To evaluate fungal adaptation to insect hemocole, the fifth instar larvae of cotton bollworms were injected with spore suspension and fungal cells isolated by centrifugation in a step gradient buffer. To unveil the mechanism of interaction with plants, the fungus was grown in corn root exudates for 24 hours. After RNA sequencing, around three million tags were acquired for each sample and fungal transcriptional profiles were compared. Unveiling gene differential expression patterns when the insect biocontrol fungus Beauveria bassiana grown in insect hemocoel, corn root exudates and on insect cuticles.

2012-07-10 | E-GEOD-32699 | biostudies-arrayexpress

Grapevine response to Beauveria bassiana treatment

Project description:Fungal entomopathogens like Beauveria bassiana (Bals.) Vuill. (Ascomycota: Hypocreales) are known as antagonist of insects with multiple functional and ecological roles and have attracted increased attention as biocontrol agents in integrated pest management programs. A microarray analysis was performed to work out fundamental aspects of genes involved in the interaction between grapevine and the endophytic fungus B. bassiana. The results indicate an up-regulation of diverse defense-related genes in grapevine as a response to a treatment with B. bassiana

2019-12-31 | GSE132311 | GEO

Profound effect of histone methyltransferase (DIM5) on genomic expression of Beauveria bassiana

Project description:Methods: Total RNAs were extracted from three 3-day-old hyphal cultures (replicates) of dim5 disruption and wild-type strains grown under normal culture conditions and and subjected to deep sequencing on Illumina Novaseq 6000 platform. The sequence reads that passed quality filters were mapped to the genome of Beauveria bassiana. All genes differentially expressed in the disruptant versus the wild-type strain were enriched to GO function classes and KEGG pathways. Results: The resultant transcriptome comprises 10915 genes annotated or not annotated. Among those, 1201 genes (genomic 11.59%) were dysregulated in the absence of dim5, including 489 down-regulated and 712 up-regulated. Conclusions: DIM5 has profound impact on the genomic expression of Beauveria bassiana.

2021-01-05 | GSE164202 | GEO

Profound effect of a small cysteine-free protein (pspA) on genomic expression of Beauveria bassiana

Project description:Purpose: This transcriptomic analysis aims at unveiling all possible genes orchestrated by pspA, which is evidently required for insect pathogenicity and virulence-related cellular events of Beauveria bassiana. Methods: Total RNAs were extracted from three 3-day-old hyphal cultures (replicates) of pspA disruption and wild-type strains grown under normal culture conditionsand and subjected to deep sequencing on Illumina NovaseqTM 6000 platform. The sequence reads that passed quality filters were mapped to the genome of Beauveria bassiana. All genes differentially expressed in the disruptant versus the wild-type strain were enriched to GO function classes and KEGG pathways. Results: The resultant transcriptome comprises 10430 genes annotated or not annotated. Among those, 1818 genes (genomic 17.54%) were dysregulated in the absence of pspA, including 806 down-regulated and 1012 up-regulated. Conclusions: pspA lacking any predictable function domain has profound impact on the genomic expression of Beauveria bassiana.

2020-10-01 | GSE158758 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data