Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dichapetalum cymosum

ABSTRACT: Transcriptome of Dichapetalum cymosum in response to mechanical wounding

PROVIDER: PRJNA634987 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11862600_1.fastq.gz	Fastqsanger.gz
	SRR11862600_2.fastq.gz	Fastqsanger.gz
	SRR11862601_1.fastq.gz	Fastqsanger.gz
	SRR11862601_2.fastq.gz	Fastqsanger.gz
	SRR11862602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Transcriptional response to mechanical wounding stress in Oryza sativa

Project description:To understand the dynamics and global gene reprogramming in the early response to mechanical wounding in rice, the transcriptional response to mechanical injury was analyzed. A time-course experiment revealed the highly dynamic nature of the wound response in rice. Mechanical wounding triggered extensive gene expression reprogramming in the locally wounded leaf, affecting various physiological processes, including defense mechanisms and potentially tissue repair and regeneration. The rice response to mechanical wounding displayed both differences and similarities compared to the response to jasmonate treatment. These results highlight the importance of early JA signaling in response to mechanical stress in rice. This analysis provides an overview of the global transcriptional response to mechanical stress in rice, offering valuable insights for future studies on rice's response to injury, insect attack, and abiotic stresses.

2024-10-21 | GSE279814 | GEO

Arabidopsis thaliana

Project description:5 min mechanical wounding

| PRJNA102005 | ENA

Profiling of caf1a and caf1b mutants

Project description:Identify the genes which are misexpressed in Atcaf1a and Atcaf1b mutants before and in response to mechanical wounding.

2010-01-05 | GSE17022 | GEO

Transcriptional response to mechanical wounding stress in Oryza sativa

Project description:Transcriptional response to mechanical wounding stress in Oryza sativa

| PRJNA1174730 | ENA

Gene expression in Arabidopsis thaliana leaves after chilling and/or herbivory by Pieris brassicae or Mamestra brassice larvae or after mechanical wounding

Project description:To investigate the impact of a plant´s response to abiotic stress on plant defense against subsequent biotic stress, we determined the transcriptional response of Arabidopsis thaliana to low temperature stress (4°C) and subsequent mechanical wounding or larval feeding damage by the herbivores Mamestra brassicae (generalist) and Pieris brassicae (specialist). In total, 21%, 4% and 14% of all genes responsive to M. brassicae, P. brassicae or mechanical wounding were differentially regulated in previously cold-treated compared to untreated plants.

2019-05-15 | GSE114211 | GEO

Hybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet1

Project description:We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to a variety of stress treatments (insect feeding by Malacosoma disstria larvae, mechanical wounding, and wounding plus the application of insect oral secretions) over a 24 hour time course. Experiments were conducted using clonal trees under greenhouse conditions at the University of British Columbia. We used the 15.5K poplar cDNA microarray platform previously described by Ralph et al. (Molecular Ecology 2006, 15:1275-1297). Differentially expressed genes were determined using three criteria: fold-change between treated and untreated control leaves > 1.5-fold, P value < 0.05 and Q value < 0.05. This study identified > 1,000 differentially expressed genes in response to insect feeding and/or treatments that mimic insect feeding damage. A factorial hybridization design was chosen to assess gene expression among the untreated control leaves, and leaves subjected to one of three stress treatments: forest tent caterpillar (Malacosoma disstria) feeding, mechanical wounding, and mechanical wounding plus the application of forest tent caterpillar oral secretions. For each tree, the lowest five mature leaves were caged in nylon mesh bags, treated or left untreated as a control. Leaves were harvested 2, 6 or 24 hours after the initiation of each treatment and total RNA was individually isolated from each tree. For each treatment and time point, equal amounts of total RNA were combined from each of the five biological replicate trees prior to cDNA microarray analysis. For the herbivory, mechanical wounding and oral secrection treatments, total RNA from treated and untreated control leaves was compared using a balanced loop consisting of direct and indirect comparisons across treatments and time points, with dye balance, using a total of 54 hybridizations.

2008-12-30 | E-GEOD-13767 | biostudies-arrayexpress

Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis

Project description:This SuperSeries is composed of the following subset Series: GSE40922: Arabidopsis thaliana wild type control (C) vs Pseudomonas syringae infected (Pseu) GSE40923: Arabidopsis thaliana wild type mechanical damage (MD) vs herbivore wounding (HW) GSE40924: Arabidopsis thaliana wild type mechanical damage (MD) vs Myzus persicae wounding (Myz) Refer to individual Series

2012-09-18 | E-GEOD-40926 | biostudies-arrayexpress

Exploration of wound signaling pathway in Calotropis procera

Project description:To explore the wound response in C.procera seedlings, a customized microarray chip (8x60K) was developed using the annotated transcripts obtained from de novo transcriptome data of C.procera. 3-month-old seedlings were subjected to mechanical wounding for 1h, 3h and 6 hours and RNA was isolated for the microarray hybridization and analysis. Expression analysis of transcripts involved in defense, primary metabolism, secondary metabolism, TFs were studied in comparison of control seedlings.

2020-05-10 | GSE131170 | GEO

Early transcriptomic responses of rice leaves to herbivory by Spodoptera frugiperda

Project description:In this experiment we aimed to decipher the transcription response of rice to the different cues of an herbivory attack from the chewing caterpillar Spodoptera frugiperda. We performed a herbivory mimic procedure on seedlings and applied mechanical wounding (WOS), application of herbivore oral secretions (OS) after wounding (WOS+) and dysbiotic OS (WOS-) on rice leaves. RNA was extracted from control and treated leaves after two hours. 5 biological replicates corresponding to 5 pooled leaves were performed for each of the four condition

2023-08-31 | E-MTAB-13227 | biostudies-arrayexpress

PCAN_TRAUMATEST

Project description:Gene expression analysis in response to mechanical injuries in Pinus canariensis, known for a great healing ability. Traumatic xylem formed in the margins of the wounds were compared to control tissues, sampled from remote parts of the plant, in order to check transcriptomical variations in three dates during the response: H1, H2 and H3 for 7, 78 and 92 days after wounding.

2017-10-26 | GSE102275 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data