Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schrenkiella parvula strain:unknown

ABSTRACT: Eutrema parvulum Genome sequencing

PROVIDER: PRJNA63667 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR074858.fastq.gz	Fastqsanger.gz
	SRR074859.fastq.gz	Fastqsanger.gz
	SRR074859_1.fastq.gz	Fastqsanger.gz
	SRR074859_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 59

Similar Datasets

Schrenkiella parvula

Project description:Eutrema parvulum overview

| PRJNA63843 | ENA

Schrenkiella parvula isolate:seedlings | cultivar:Wild type Thellungiella parvula (Schrenkiella parvula/Eutrema parvulum) (CS22663) from ABRC

Project description:Thellungiella parvula (Schrenkiella parvula/Eutrema parvulum), wild type, shoot and roots from seedlings at 8 day-old

| PRJNA877258 | ENA

Lancefieldella parvula

Project description:Atopobium parvulum overview

| PRJNA38835 | ENA

Schrenkiella parvula, Arabidopsis thaliana

Project description:Comparison of responses to boron toxicity between Arabidopsis thaliana and Schrenkiella parvula

| PRJNA663969 | ENA

Genome-wide analysis of annexin gene family in Schrenkiella parvula and Eutrema salsugineum suggests their roles in salt stress response

Project description:Annexins (Anns) play an important role in plant development, growth and responses to various stresses. Although Ann genes have been characterized in some plants, their role in adaptation mechanisms and tolerance to environmental stresses have not been studied in extremophile plants. In this study, Ann genes in Schrenkiella parvula and Eutrema salsugineum were identified using a genome-wide method and phylogenetic relationships, subcellular distribution, gene structures, conserved residues and motifs and also promoter prediction have been studied through bioinformatics analysis. We identified ten and eight encoding putative Ann genes in S. parvula and E. salsugineum genome respectively, which were divided into six subfamilies according to phylogenetic relationships. By observing conservation in gene structures and protein motifs we found that the majority of Ann members in two extremophile plants are similar. Furthermore, promoter analysis revealed a greater number of GATA, Dof, bHLH and NAC transcription factor binding sites, as well as ABRE, ABRE3a, ABRE4, MYB and Myc cis-acting elements in compare to Arabidopsis thaliana. To gain additional insight into the putative roles of candidate Ann genes, the expression of SpAnn1, SpAnn2 and SpAnn6 in S. parvula was studied in response to salt stress, which indicated that their expression level in shoot increased. Similarly, salt stress induced expression of EsAnn1, 5 and 7, in roots and EsAnn1, 2 and 5 in leaves of E. salsugineum. Our comparative analysis implies that both halophytes have different regulatory mechanisms compared to A. thaliana and suggest SpAnn2 gene play important roles in mediating salt stress.

| S-EPMC9847905 | biostudies-literature

Comparison of basal gene expression strengths between Schrenkiella parvula and Arabidopsis thaliana

Project description:Using RNA sequencing, we compared transcriptomes of root and aerial tissues of S. parvula and Arabidopsis and identified genes and pathways with significantly different basal expression strengths. Many stress-related ion transporter genes in S. parvula showed increased copy numbers and basal expression strengths compared with Arabidopsis, with evidence of subfunctionalization. These results provide a blueprint for mechanisms of plant ion stress tolerance as well as potential genetic resources for crop improvement in closely related species. Note: All samples in SRA were assigned the same sample accession (SRS845940 and SRS845941). This is incorrect as there are different samples, hence “Source Name” was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2015-02-16 | E-MTAB-4369 | biostudies-arrayexpress

Schrenkiella parvula cultivar:Lake Tuz

Project description:Schrenkiella parvula Lake Tuz Gene Expression Profiling - SpShootPooled transcriptome

| PRJNA696869 | ENA

Schrenkiella parvula cultivar:Lake Tuz

Project description:Schrenkiella parvula Lake Tuz Gene Expression Profiling - SpRootPooled transcriptome

| PRJNA696870 | ENA

Complete genome sequence of Veillonella parvula type strain (Te3).

Project description:Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 is the type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque in the human oral cavity and can cause opportunistic infections. The species is strictly anaerobic and grows as small cocci which usually occur in pairs. Veillonellae are characterized by their unusual metabolism which is centered on the activity of the enzyme methylmalonyl-CoA decarboxylase. Strain Te3(T), the type strain of the species, was isolated from the human intestinal tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the large clostridial family Veillonellaceae, and the 2,132,142 bp long single replicon genome with its 1,859 protein-coding and 61 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

| S-EPMC3035260 | biostudies-literature

Clostridiaceae strain:unknown

Project description:Clostridiaceae strain:unknown Genome sequencing

| PRJNA1051510 | ENA