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Phytophthora

ABSTRACT: Phytophthora Genome sequencing and assembly

PROVIDER: PRJNA641215 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR12204736_1.fastq.gz	Fastqsanger.gz
	SRR12204736_2.fastq.gz	Fastqsanger.gz
	SRR12204737_1.fastq.gz	Fastqsanger.gz
	SRR12204737_2.fastq.gz	Fastqsanger.gz
	SRR12204738_1.fastq.gz	Fastqsanger.gz

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Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs: Phytophthora sojae small RNA

Project description:Deep sequencing of small RNAs from three Phytophthora species, P. infestans, P. ramorum and P. sojae, was done to systematically analyze small RNA-generating components of Phytophthora genomes. We found that each species produces two distinct small RNA populations that are predominantly 21- or 25-nucleotides long. We present evidence that 25-nucleotide small RNAs are short-interfering RNAs that silence repetitive genetic elements. In contrast, 21-nucleotide small RNAs are associated with inverted repeats, including a novel microRNA family, and may function at the post-transcriptional level. Phytophthora sojae mycelium small RNAs were sequenced and aligned to the P. sojae genome for analysis. *Raw data files (fastq) are unavailable for this study.

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