Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DEX Induced effector RiNLE1 expression inhibited plant defense genes expression

ABSTRACT: DEX Induced effector RiNLE1 expression inhibited plant defense genes expression

PROVIDER: PRJNA655217 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12386335.fastq.gz	Fastqsanger.gz
	SRR12386336.fastq.gz	Fastqsanger.gz
	SRR12386337.fastq.gz	Fastqsanger.gz
	SRR12386338.fastq.gz	Fastqsanger.gz
	SRR12386339.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

DEX Induced effector RiNLE1 expression inhibited plant defense genes expression

Project description:Since we reasoned that RiNLE1 exerts its functions inside host nuclei, we explored the influence of RiNLE1 on plant gene expression. Therefore, we applied a dexamethasone (DEX) inducible promoter system (Borghi, 2010) to induce RiNLE1 expression (lacking signal peptide) in Medicago roots. As a control we replaced the RiNLE1 coding sequence by a short nonsense sequence.

2020-08-05 | GSE155682 | GEO

Expression analysis of Arabidopsis transgenic plants carrying DEX-inducible MKK4DD in Col or sid2 background treated with DEX or control

Project description:Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI) are well-defined modes of plant immunity triggered by recognition of pathogen effector proteins and microbe-associated molecular patterns, respectively. While ETI and PTI network extensively share signaling components, the shared components are used in different ways, resulting in distinct network properties in the model plant Arabidopsis: immunity is highly robust against network perturbations in ETI but relatively sensitive in PTI. However, the molecular mechanism how the shared network leads to the different properties is not known. Here we show that sustained MAPK activation compensate salicylic acid (SA) signaling. A 12 DNA microarray study using total RNA from Arabidopsis transgenic plants carrying DEX-inducible MKK4DD in Col or sid2-2 background treated with DEX or control.

2014-07-29 | E-GEOD-40547 | biostudies-arrayexpress

Wild type Lec1 transgene induction by DEX: Establishing the network of seed gene expression and analysis of its biodiversity (wt dex induction)

Project description:wt dex induction - Identification of LEC1 target genes - Induction of 14 days old WT seedlings , different treatments ( EtOH, DEX induction) for 8 hours

2011-08-31 | GSE22059 | GEO

microRNA changes during Dex-induced pDC apoptosis

Project description:To identify microRNA changed during Dex-induced pDC apoptosis and CpG hampered Dex-induced pDC apoptosis

2016-04-20 | GSE46445 | GEO

Changes in gene expression upon co-treatment of cells with Dex and E2

Project description:We report changes in gene expression upon co-treatment with Dex and E2 when compared to Dex or E2 treatments alone.

2013-07-01 | GSE46116 | GEO

wt dex induction-Establishing the network of seed gene expression and analysis of its biodiversity

Project description:tri33-lec1 - wt dex induction - Identification of LEC1 target genes - Induction of 14 days old WT seedlings , different treatments ( EtOH, DEX induction) for 8 hours

2012-03-27 | GSE36628 | GEO

IgE Effector Mechanisms, in Concert with Mast Cells, Contribute to Acquired Host Defense against Staphylococcus aureus

Project description:Best known for their roles in allergic diseases, the physiologic function of immunoglobulin E (IgE) and mast cells (the so-called allergy module of immunity) has been enigmatic. Recent evidence shows that allergic reactions can help to protect against the toxicity of venoms. As bacteria are a potent alternative source of toxins, we assessed the potential role of the allergy module in antibacterial host defense. We observed that the immune response against S. aureus skin infection includes specific IgEs and substantially improves systemic host defense against secondary S. aureus infections in mice. This acquired protection depends on functional IgE effector mechanisms and mast cells. Our results reveal the powerful antibacterial potential of the allergy module and therefore a novel physiologic function of IgEs and mast cells.

2020-09-10 | PXD019107 | Pride

Poxvirus attack of anti-viral defense pathways unleashes an effector-triggered NF-κB response

Project description:Poxvirus attack of anti-viral defense pathways unleashes an effector-triggered NF-κB response

| PRJNA1214822 | ENA

Poxvirus attack of anti-viral defense pathways unleashes an effector-triggered NF-κB response

Project description:Effector-triggered immunity (ETI) is a form of pathogen sensing that involves detection of pathogen-encoded virulence factors or “effectors”. To discover novel ETI pathways in mammals, we developed a screening approach in which individual virulence factors are expressed in human monocytes and transcriptional responses are assessed by RNA-seq. Using this approach, we identify a poxvirus effector, myxoma virus M3.1, which elicits an anti-viral NF-κB response. We find that NF-κB is unleashed by an ETI pathway that senses M3.1 attack of two anti-viral complexes: ZAP and TBK1. NF-κΒ activation occurs because the proteins inhibited by M3.1—N4BP1, ZC3H12A, and TBK1—are negative regulators of NF-κB. Our results illustrate how negative regulators can function as pathogen sensors and establish a systematic approach for the discovery of ETI pathways.

2025-02-16 | GSE287860 | GEO

Changes in gene expression upon co-treatment of cells with Dex and E2

Project description:We report changes in gene expression upon co-treatment with Dex and E2 when compared to Dex or E2 treatments alone. We examine expression under four different treatments (unt, Dex, E2, and Dex + E2).

2013-07-01 | E-GEOD-46116 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data