Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-sequencing (transcriptome analysis) of Desulfovibrio vulgaris Hildenborough during electron uptake process on a cathode.

ABSTRACT: RNA-sequencing (transcriptome analysis) of Desulfovibrio vulgaris Hildenborough during electron uptake process on a cathode.

PROVIDER: PRJNA655409 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12391415_1.fastq.gz	Fastqsanger.gz
	SRR12391415_2.fastq.gz	Fastqsanger.gz
	SRR12391416_1.fastq.gz	Fastqsanger.gz
	SRR12391416_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

RNA-sequencing (transcriptome analysis) of Desulfovibrio vulgaris Hildenborough during electron uptake process on a cathode.

Project description:Desulfovibrio vulgaris Hildenoborough was incubated in an H-type electrochemical reactor for 7 days on an indium-tin doped oxide electrode poised at −0.2 V (versus standard hydrogen electrode), which served as the sole electron donor. As a negative open circuit (without electrode) control, cells were incubated in a glass vial in the absence of an electrode. Total RNA was extracted from cells after incubation, and RNA fragments were purified and transcribed into cDNA. cDNA was sequenced by NovaSeq 6000 System.

2023-08-04 | GSE155721 | GEO

Desulfovibrio vulgaris Hildenborough biofilm DDA

Project description:Biofilms of mutant strains of Desulfovibrio vulgaris Hildenborough were sampled and compared via proteomics

2024-12-04 | PXD056366 | Pride

Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough

Project description:We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course

2007-08-09 | GSE8196 | GEO

Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough

Project description:We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response

2007-07-01 | GSE7816 | GEO

Function of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

Project description:The sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough possesses four periplasmic hydrogenases to facilitate the oxidation of molecular hydrogen. These include an [Fe], a [NiFeSe] and two [NiFe] hydrogenases encoded by the hyd, hys, hyn1 and hyn2 genes, respectively. In order to understand their cellular functions the expression levels of these hydrogenases, along with the growth rate analysis of mutant strains, was determined during growth on defined media under 3 different conditions. These conditions incuded lactate or hydrogen at either 5% or 50% (vol/vol) used as the sole electron donor for sulfate reduction. Keywords: Electron donor change

2007-07-02 | GSE8137 | GEO

Effect of carbon monoxide and the CO sensor CooA on gene expression in Desulfovibrio vulgaris Hildenborough

Project description:Investigating the role of carbon monoxide and a CO sensor protein CooA in the physiology of Desulfovibrio vulgaris Hildenborough using whole genome expression analysis

2012-07-31 | GSE36770 | GEO

Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough

Project description:We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course Comparison of cells treated with air to untreated cells at 0,10,30,120,240 min.

2007-08-08 | E-GEOD-8196 | biostudies-arrayexpress

Desulfovibrio ferrophilus IS5 electron uptake

Project description:Identification of putative proteins of interest that are involved in cathodic electron uptake by the novel iron-corroding strain D. ferrophilus IS5

2020-09-28 | PXD020803 | Pride

Function of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

2010-06-10 | E-GEOD-8137 | biostudies-arrayexpress

Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough

Project description:We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.

2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data