Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ARP1 deletion sequencing

PROVIDER: PRJNA657114 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12450959_1.fastq.gz	Fastqsanger.gz
	SRR12450959_2.fastq.gz	Fastqsanger.gz
	SRR12450960_1.fastq.gz	Fastqsanger.gz
	SRR12450960_2.fastq.gz	Fastqsanger.gz
	SRR12450961_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:ARP1 deletion sequencing

| PRJNA656677 | ENA

To search for downstream genes of CBL in MM

Project description:Co-ip assay was used to conduct protein interaction between ARP1 wild-type cells and ARP1 CBL overexpressed cells. After adhesive strips were cut, samples were sent for mass spectrometry sequencing to search for downstream proteins

2021-11-22 | PXD029872 |

Transcriptome analysis of siVCP and siNC in ARP1 cells

Project description:Transcriptome sequencing was used to analyze changes in related signaling pathways and gene expression in ARP1 cells when VCP was knocked down.

2022-08-12 | GSE210920 | GEO

ChIP-seq analysis of myeloma cell lines

Project description:ARP1, MM1S, and RPMI8226 myeloma cells lines were analyzed by ChIP-seq using antibodies against BRD4, MED1, IKZF1, ETV4

2019-03-13 | GSE128024 | GEO

MeRIP-Seq map HNRNPA2B1 maintains MM tumorigenicity by m6A dependent stabilizing of mRNA

Project description:To investigated the mechanism of HNRNPA2B1 in MM tumorigenesis, performed m6A IP seq analysis (MeRIP-Seq) to identify the expression changes in stable HNRNPA2B1-knockdown MM cells.60 genes m6A with over 2-fold expression change in shHNRNPA2B compared with control in both ARP1 and H929 cells.44 differentially expressed genes (P<0.05) in both m6A and transcription in shHNRNPA2B compared with control in ARP1 cell.

2021-11-30 | GSE162745 | GEO

Williamsia herbipolensis strain:ARP1

Project description:Williamsia herbipolensis strain:ARP1 Genome sequencing and assembly

| PRJNA272726 | ENA

RNA sequence of gene expression in LPA or PBS treated human ARP1 multiple myeloma cells

Project description:we use RNA sequence to detect the global gene expression in human ARP1 MM cells after 24 hours of LPA or PBS treatment in vitro

2022-07-29 | GSE181403 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of transcriptomes in Multiple Myeloma (MM) cell lines treated with DMSO and Indirubin-3’-monoxime (I3MO)

Project description:To determine what signaling pathways are affected by I3MO in MM cells, 5 MM cell lines including ANBL6, ANBL6 BR, ARP1, RPMI-8226, and U266, were cultured with DMSO or 5/10µM I3MO for 48 h. Total RNAs of 2 x 10^6 cells for each sample were extracted using the RNeasy Mini Kit (Qiagen). The RNA yield was determined by Nanodrop technology (Thermo Fisher Scientific), and quality was verified on the Agilent 2100 bioanalyzer (Agilent Technologies). cDNA libraries were prepared for sequencing using standard Illumina protocols, followed by sequencing on the NextSeq500 Sequencing System (Illumina). We used gene expression profiling data to determine differential expression of genes in MM cells in culture with DMSO or I3MO.

2022-01-26 | GSE194379 | GEO

Transcriptome analysis of siVCP and siNC in ARP1 cells

Project description:Transcriptome analysis of siVCP and siNC in ARP1 cells

| PRJNA868314 | ENA

Xdrop - Oxford Nanopore long read seqeuncing of HepG2 genetic modified clones

Project description:This dataset contains Xdrop followed by oxford nanopore long read sequencing performed in target tRNA gene deletion (t8) and intergenic region deletion (i50) clones in HepG2 . By applying de novo assembly based approach to Xdrop-LRS data, we identified Cas9-induced on-target genomic alteration.

2022-09-16 | E-MTAB-11327 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data