Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Benchmarking DNA extraction kits used in analyses of the urinary microbiome

PROVIDER: PRJNA662669 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12635403.fastq.gz	Fastqsanger.gz
	SRR12635403_1.fastq.gz	Fastqsanger.gz
	SRR12635403_2.fastq.gz	Fastqsanger.gz
	SRR12635404.fastq.gz	Fastqsanger.gz
	SRR12635404_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Nassar2022 - Microbome nucleic acid extraction kit NER model

Project description:Microbiome nucleic acid extraction kit model is a Named Entity Recognition (NER) model that identifies and annotates the name of the kits used in extracting microbiome nucleic acids in texts. This is the final model version used to annotate metagenomics publications in Europe PMC and enrich metagenomics studies in MGnify with kits metadata from literature. For more information, please refer to the following blogs: http://blog.europepmc.org/2020/11/europe-pmc-publications-metagenomics-annotations.html https://www.ebi.ac.uk/about/news/service-news/enriched-metadata-fields-mgnify-based-text-mining-associated-publications

2022-02-21 | MODEL2202170007 | BioModels

Bacteria and eukaryotes

Project description:The study of DNA extraction kits

| PRJNA474064 | ENA

synthetic metagenome

Project description:A benchmark of DNA extraction kits, PCR primers and bioinformatics analysis strategies for human gut microbiome analyses

| PRJDB10817 | ENA

Comparison of DNA extraction kits for MiSeq sequencing

Project description:Comparison of DNA extraction kits for MiSeq sequencing

| PRJEB10820 | ENA

Gene activity induced by denervation in the rat urinary bladder [miRNA]

Project description:Bilateral freezing of the pelvic ganglia in female rats were performed to denervate the urinary bladder. Sham operated rats were used as controls. The rats were sacrificed 10 days after surgery. The urinary bladders (including the urothelium) were frozen and used for RNA extraction.

2018-03-10 | GSE104539 | GEO

The assessment of differential expression in the hypothalamus following MMS

Project description:The hypothalamus was extracted from MMS and control groups immeadiately at the end of the paradigm on P6, RNA extraction done using Qiagen RNA/DNA extraction kits.

2021-06-01 | GSE147375 | GEO

Fecal microbiomes

Project description:Benchmarking viral extraction methods

| PRJNA1004351 | ENA

bench_herb_atha

Project description:Benchmarking extraction of ultrashort DNA molecules from herbarium specimens

| PRJEB15366 | ENA

Gene activity induced by denervation in the rat urinary bladder [mRNA]

2018-03-10 | GSE104538 | GEO

A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma

Project description:We compared 3 small RNA library prep kits (CleanTag, NEXTflex, QIAseq) and two RNA extraction methods (miRNeasy and MagnaZol) on plasma. We report that library preparation has a significant effect upon the miRNA profile detected, with QIAseq libraries exhibiting the least sequencing bias of the three library kits. RNA extraction methods also contribute, to a lesser extent, to the miRNA profile detected, with MagnaZol RNA extraction increasing the percentage of reads mapping to miRNAs and the number of individual miRNAs detected.

2019-05-21 | GSE118125 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data