Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Broiler Chicken Cecum

ABSTRACT: Broiler chicken cecum raw sequence reads

PROVIDER: PRJNA663615 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12649200.fastq.gz	Fastqsanger.gz
	SRR12649300.fastq.gz	Fastqsanger.gz
	SRR12649201.fastq.gz	Fastqsanger.gz
	SRR12649301.fastq.gz	Fastqsanger.gz
	SRR12649202.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 133

Similar Datasets

cecum contents

Project description:cecum contents from Arbor Acres broiler chicken Raw sequence reads

| PRJNA341571 | ENA

broiler cecum digesta

Project description:broiler cecum digesta Genome sequencing and assembly

| PRJNA1137068 | ENA

Effect of an immune challenge and feed supplements on broiler chicken individual breast muscle protein synthesis

Project description:Optimization of broiler chicken breast muscle protein accretion is key for the efficient production of poultry meat, whose demand is steadily increasing. In a context where antimicrobial growth promoters use is being restricted, it is important to find alternatives as well as to characterize the effect of immunological stress on broiler chicken growth. Despite of its importance, research on broiler chicken muscle protein dynamics has been mostly limited to the study of mixed protein turnover. The present study aims to characterize the effect of a bacterial challenge and the feed supplementation of a citrus and a cucumber extract on broiler chicken individual breast muscle proteins fractional synthesis rates (FSR) using a recently developed dynamic proteomics pipeline. 21 day-old broiler chickens were administered a single 2H2O dose before being culled at different timepoints. A total of 60 breast muscle protein extracts from five experimental groups (Unchallenged, Challenged, Control Diet, Diet 1 and Diet 2) were analyzed using a DDA proteomics approach. Proteomics data was filtered in order to reliably calculate multiple proteins FSR making use of a newly developed bioinformatics pipeline. Broiler breast muscle proteins FSR uniformly decreased following a bacterial challenge, this change was judged significant for 15 individual proteins, the two major functional clusters identified as well as for mixed breast muscle protein. Citrus or cucumber extract feed supplementation did not show any effect on the breast muscle protein FSR of immunologically challenged broilers. The present study has identified potential predictive markers of breast muscle growth and provided new information on broiler chicken breast muscle protein turnover which could be essential for improving the efficiency of broiler chicken meat production.

2024-04-04 | PXD044325 | Pride

SE challenged in 3 genetic chicken lines

Project description:3 genetic chicken lines (Leghorn G-B1, Fayoumi, broiler) were used. chicken were challenged with SE at day 1, spleen and cecum tissues were collected at 2 hours and 16 hours after post challenge Keywords: time-course

2006-04-23 | GSE2562 | GEO

SE challenged in 3 genetic chicken lines

2010-06-11 | E-GEOD-2562 | biostudies-arrayexpress

chicken gut metagenome breed:Avian broiler

Project description:chicken gut metagenome breed:Avian broiler Raw sequence reads

| PRJNA573420 | ENA

Fold change of expression in Aseel (an indigenous chicken breed) as compared to broiler chicken in 7th day of embryonic stage

Project description:The expression of genes were analysed in 7th day of embryonic stage between Aseel, an indigenous slow-growing chicken, and control broiler, a fast-growing broiler chicken line. The whole embryo was collected in TRIZOL and total RNA was isolated. The expression profile of gene was determined in 64k Agilent chicken microarray chip. The Cy3 dye was used for detection. The fold change of expression was analysed in Aseel as compared to broiler chicken line.

2014-10-17 | GSE62443 | GEO

S. enterica Intracloacal challenge chicken cecum microbiome

Project description:S. enterica Intracloacal challenge chicken cecum microbiome Raw sequence reads

| PRJNA688069 | ENA

Fold change of expression in Aseel (an indigenous chicken breed) as compared to broiler chicken in muscle of 18th day of embryonic stage

Project description:The expression of genes were analysed in muscle of 18th day of embryonic stage between Aseel, an indigenous slow-growing chicken, and control broiler, a fast-growing broiler chicken line. The whole embryo was collected in TRIZOL and total RNA was isolated. The expression profile of gene was determined in 64k Agilent chicken microarray chip. The Cy3 dye was used for detection. The fold change of expression was analysed in Aseel as compared to broiler chicken line.

2014-10-17 | GSE62444 | GEO

Microbiome of chicken cecum

Project description:Microorganism of chicken cecum

| PRJNA742113 | ENA