Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Heterotrophic euglenids

PROVIDER: PRJNA663625 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12646291_1.fastq.gz	Fastqsanger.gz
	SRR12646291_2.fastq.gz	Fastqsanger.gz
	SRR12646292_1.fastq.gz	Fastqsanger.gz
	SRR12646292_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptomic responses to iron bioavailability from virus-mediated lysates in marine prokaryotes

Project description:Previous studies have demonstrated that the iron content in marine heterotrophic bacteria is comparatively higher than that of phytoplankton. Therefore, they have been indicated to play a major role in the biogeochemical cycling of iron. In this study, we aimed to investigate the potential of viral lysis as a source of iron for marine heterotrophic bacteria. Viral lysates were derived from the marine heterotrophic bacterium, Vibrio natriegens PWH3a (A.K.A Vibrio alginolyticus). The bioavailability of Fe in the lysates was determined using a model heterotrophic bacterium, namely, Dokdonia sp. strain Dokd-P16, isolated from Fe-limited waters along Line P transect in the Northeastern Pacific Ocean. The bacteria were grown under Fe-deplete or Fe-replete conditions before being exposed to the viral lysate. Differential gene expression following exposure to the viral lysate was analyzed via RNA sequencing to identify differentially expressed genes under iron-replete and iron-deplete conditions. This study would provide novel insights into the role of viral lysis in heterotrophic bacteria in supplying bioavailable iron to other marine microorganisms under iron-limiting and non-limiting conditions. First, the marine heterotrophic bacterium genome, Dokdonia sp. strain Dokd-P16, was sequenced to provide a genomic context for the expression studies. Subsequently, the relative gene expression in Dokdonia sp. strain Dokd-P16 grown under Fe limiting and non-limiting conditions were analyzed. This transcriptomic approach would be utilized to elucidate genes regulated by Fe availability in Dokdonia sp. strain Dokd-P16, which indicate its Fe-related response viral lysate exposure. Taken together, in this study, the transcriptomic responses of Fe-limited and non-limited marine heterotrophic bacteria were analyzed, which provided novel insights into the biological availability of Fe from the viral lysates.

2021-11-01 | GSE166618 | GEO

Project description:Single-cell transcriptomes of phagotrophic euglenids

| PRJNA624171 | ENA

Breakdown of the Photosynthetic Apparatus in Chromochloris zofingiensis

Project description:RNA-Seq of Chromochloris zofingiensis following the transition from photoautotrophic growth to heterotrophic growth on glucose.

2019-01-03 | GSE92518 | GEO

Biogenesis of the Photosynthetic Apparatus in Chromochloris zofingiensis

Project description:RNA-Seq of Chromochloris zofingiensis following the transition from heterotrophic growth on glucose to photoautotrophic growth.

2019-01-03 | GSE92516 | GEO

Characteristics of circular extrachromosomal DNA in euglenids

Project description:Characteristics of circular extrachromosomal DNA in euglenids

| PRJEB67978 | ENA

Project description:Single-cell transcriptomes of ploeotid phagotrophic euglenids

| PRJNA929644 | ENA

Project description:Heterotrophic bacteria

| PRJNA909984 | ENA

Trancriptional profiling of A. fulgidus VC16

Project description:Transcriptional response of the hyperthermophilic sulfate reducing archaeon Archaeoglobus fulgidus VC16 to lithoautotrohpic and heterotrophic growth conditions

2014-03-10 | E-MTAB-2294 | biostudies-arrayexpress

Analysis of Thermosynechococcus elongatus BP1 response to co-cultivation with Meiothermus ruber strain A

Project description:The transcriptional response of the cyanobacteria T. elongatus to co-cultiavation with a heterotrophic partner M. ruber was examined under three varying light levels and three varying oxygen levels.

2017-01-27 | GSE94125 | GEO

Analysis of Thermosynechococcus elongatus BP1 and Meiothermus ruber strain A co-cultured under variable light and oxygen conditions

2017-01-20 | GSE93859 | GEO