Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coral metagenome

ABSTRACT: Alteration in the mucus microbiota of diverse coral species infected with Stony Coral Tissue Loss Disease

PROVIDER: PRJNA666222 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR18209400.fastq.gz	Fastqsanger.gz
	SRR18209301.fastq.gz	Fastqsanger.gz
	SRR18209403.fastq.gz	Fastqsanger.gz
	SRR18209304.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Coral Samples for a Stony Coral Tissue Loss Disease study

Project description:Stony coral tissue loss disease study

| PRJNA726962 | ENA

Metaproteomic analysis of nine coral species with and without Stony Coral Tissue Loss Disease (SCTLD)

Project description:Florida’s coral reefs are currently experiencing a multi-year disease-related mortality event, that has resulted in massive die-offs in multiple coral species. Approximately 21 species of coral, including both Endangered Species Act-listed and the primary reef-building species, have displayed tissue loss lesions which often result in whole colony mortality [Stony Coral Tissue Loss Disease (SCTLD)]. Determining the causative agent(s) of coral disease relies on a multidisciplinary approach since the causation may be a combination of abiotic, microbial or viral agents. Metaproteomics was used to survey changes in the molecular landscape in the coral holobiont with the goal of providing useful information not only in diagnosis, but for prediction and prognosis. Specifically, in the case of SCTLD, defining molecular changes in the coral holobiont will help define disease progression and aid in identifying the causative agent by clearly defining traits of disease progression shared across affected species. Using samples from nine coral species (46 samples total; those appearing healthy, n = 23, and diseased, n = 23), analysis of the coral and its associated microbiome were performed using bottom-up proteomics. Ongoing analysis (including improving coral holobiont genome-based search space) will demonstrate the utility of this approach and help define improved future experiments.

2021-05-21 | PXD026192 | Pride

Coral Reef

Project description:Coral Reef Stony Coral Tissue Loss Disease Microbiomes in Coral Tissue and Near-Coral Seawater

| PRJNA672912 | ENA

Proteomic Investigation of Factors Driving Resistance and/or Resilience to Stony Coral Tissue Loss Disease

Project description:Florida’s coral reefs are currently experiencing a multi-year disease-related mortality event, that has resulted in massive die-offs in multiple coral species. Coral monitoring data and disease prevention/treatment efforts from recent years have identified individual Orbicella faveolata that possess high, moderate, or low resistance to stony coral tissue loss disease (SCTLD). Ninety samples of high, moderate, or low SCTLD resistance were collected from 3 reefs for bottom-up LC-MS/MS analysis (n=30 for each resistance category).

2022-01-13 | PXD030923 | Pride

Stylophora pistillata cell atlas illuminates stony coral symbiosis, calcification and immunity

Project description:We performed single-cell transcriptome analysis (using MARS-seq) in the stony coral Stylophora pistillata.

2021-05-03 | GSE166901 | GEO

Microbiome dynamics of coral reefs, Stony Coral Tissue Loss Disease, and reef fish

Project description:Microbiome dynamics of coral reefs, Stony Coral Tissue Loss Disease, and reef fish

| PRJNA986867 | ENA

Bacterial Isolates from Scleractinia Coral

Project description:This data set contains bacteria isolated from corals. The bacteria were cultured and tested in a biological assay against pathogenic bacteria that may be involved in Stony Coral Tissue Loss Disease. The bacteria in this data set include pathogenic and potentially probiotic bacteria.

2022-01-28 | MSV000088745 | MassIVE

coral microbiome

Project description:In-situ application of probiotic bacteria for treatment of Stony Coral Tissue Loss Disease

| PRJNA731903 | ENA

Project description:Stony coral tissue loss disease microbiomes

| PRJNA875070 | ENA

coral metagenome

Project description:Coral mucus Metagenome

| PRJNA263210 | ENA