Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli UTI89 isolate:Colony variants | breed:prokaryotes | cultivar:Sandeep M

ABSTRACT: Uropathogenic E. coli (WCV) Genome sequencing and assembly: Colony variants | breed: prokaryotes | cultivar: Sandeep M Genome sequencing and assembly

PROVIDER: PRJNA666979 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13823837.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Escherichia coli UTI89 isolate:Colony variants | breed:prokaryotes | cultivar:Sandeep M

Project description:Uropathogenic E. coli (RCV) Genome sequencing and assembly

| PRJNA666976 | ENA

Escherichia coli UTI89

Project description:Uropathogenic strain

| PRJNA16259 | ENA

bacterium strain:Bacillus altitudinis | breed:Prokaryotes

Project description:bacterium strain:Bacillus altitudinis | breed:Prokaryotes Genome sequencing and assembly

| PRJNA728205 | ENA

bacterium strain:Bacillus velezensis | breed:Prokaryotes

Project description:bacterium strain:Bacillus velezensis | breed:Prokaryotes Genome sequencing and assembly

| PRJNA728388 | ENA

prokaryotes

Project description:prokaryotes Raw sequence reads

| PRJNA819492 | ENA

prokaryotes

Project description:prokaryotes Raw sequence reads

| PRJNA818534 | ENA

prokaryotes

Project description:prokaryotes Raw sequence reads

| PRJNA819230 | ENA

Characterisation of Burkholderia pseudomallei colony morphology variants by microarray

Project description:Burkholderia pseudomallei is the causative agent of melioidosis which is endemic to Southeast Asia and Northern Australia. It is a Gram-negative soil and water bacterium that represents a potential bioterrorism threat. Colony morphology variation is a remarkable feature in primary clinical cultures of B. pseudomallei. Differences in expression of several potential virulence and survival genes were believed to be associated with B. pseudomallei colony morphology variants. Microarrray approach was used to investigate alterations of the global B. pseudomallei transcriptome profile at the mid-logarithmic phase of growth, among the wild type (WT) and small colony variant (SCV) of B. pseudomallei pre- and post-exposed to human lung epithelial cells, A549. Generally, SCV pre- and post-exposed have lower metabolic requirements and consume lesser energy than WT pre- and post-exposed to A549; however, both WT and SCV may limit their metabolic activity during the infection of A549 cells and this is indicated by the down-regulation of genes implicated in metabolism of amino acids, carbohydrate, lipid, and other amino acids, and biodegradation of xenobiotics. On the other hand, many well-known virulence and survival factors including T3SS, T6SS, fimbriae, capsular polysaccharides, drug resistance and stress response were up-regulated in both WT and SCV pre- and post-exposed to A549 cells. Several virulence factors expressed at the mid-logarithmic phase of growth. Microarray analysis on the different morphotypes demonstrated the essential difference in bacterial response associated with virulence and survival pre- and post-exposed to A549 cells.

2016-10-12 | GSE87827 | GEO

Streptococcus pneumoniae variants

Project description:Wildtype and small colony variants (SCV) of Streptococcus pneumoniae variants

| PRJEB19786 | ENA

Transcriptional Profile of Mycobacterium tuberculosis Colony Morphotype Variants

Project description:Transcriptional profiling of Mycobacterium tuberculosis mc2 7000 spread and raised colony morphotypes

2021-03-03 | GSE89089 | GEO