Ontology highlight
ABSTRACT:
PROVIDER: PRJNA667075 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR12765200.fastq.gz | Fastqsanger.gz | |||
| SRR12765201.fastq.gz | Fastqsanger.gz | |||
| SRR12765202.fastq.gz | Fastqsanger.gz | |||
| SRR12765203.fastq.gz | Fastqsanger.gz | |||
| SRR12765204.fastq.gz | Fastqsanger.gz |
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Project description:The biotrophic fungus Ustilago maydis causes smut disease on maize (Zea mays L.), which is characterized by immense plant tumours. To establish disease and reprogram organ primordia to tumours, U. maydis deploys effector proteins in an organ-specific manner. However, the cellular contribution to leaf tumours remains unknown. We investigated leaf tumour formation on the tissue- and cell type-specific level. Cytology and metabolite analysis were deployed to understand the cellular basis for tumourigenesis. Laser-capture microdissection was performed to gain a cell-type specific transcriptome of U. maydis during tumour formation. In-vivo visualization of plant DNA synthesis identified bundle sheath cells as the origin of hyperplasic tumour cells, while mesophyll cells become hypertrophic tumour cells. Cell type specific transcriptome profiling of U. maydis revealed tailored expression of fungal effector genes. Moreover, U. maydis See1 was identified the first cell type specific fungal effector, being required for induction of cell cycle reactivation in bundle sheath cells. Identification of distinct cellular mechanisms in two different leave cell types, and See1 as an effector for induction of proliferation of bundle-sheath cells, are major steps in understanding U. maydis-induced tumor formation. Moreover, the cell-type specific U. maydis transcriptome data is a valuable resource to the scientific community.
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Project description:Maize, as a C4 plant, possesses two distinct types of photosynthetic cells, the mesophyll (M) and the bundle sheath (BS) cells. To elucidate their functional and regulatory differentiation we isolated large quantities of highly homogeneous M and BS cells from new mature leaves for transcriptome profiling by Illumina sequencing. More than 100,000,000 reads for each cell type were mapped to the maize genome, revealing 44,964 expressed genes. Among these, 37,105 genes were expressed in M cells, including 423 M-enriched genes and 20 M-enriched transcription factor (TF) genes, whereas 42,782 genes were expressed in BS cells, including 771 BS-enriched genes and 75 BS-enriched TF genes. Pathway analyses revealed cell differentiation in various cellular activities, with M cells playing more important roles in light reaction, protein synthesis, abiotic stress, tetrapyrrole synthesis and RNA-RNA binding, while BS cells specializing in transport, signaling, protein degradation, major C metabolism, and the Calvin cycle. Genes coding for enzymes and transporters involved in photosynthesis exhibit a strong cellular preference in expression. To a lesser extent, cell differentiation also occurs in genes involved in the metabolism of starch, sucrose, nitrogen, sulfur, amino acid, and secondary metabolites. This comprehensive dataset will be useful for studying the regulation and evolution of C4-specific and related genes.
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