Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-sequencing data for 923 enhancer deletion newborn mouse keratinocytes

ABSTRACT: ATAC-sequencing data for 923 enhancer deletion newborn mouse keratinocytes

PROVIDER: PRJNA667800 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12756300_1.fastq.gz	Fastqsanger.gz
	SRR12756300_2.fastq.gz	Fastqsanger.gz
	SRR12756301_1.fastq.gz	Fastqsanger.gz
	SRR12756301_2.fastq.gz	Fastqsanger.gz
	SRR12756302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

923 enhancer deletion newborn mouse

Project description:923 enhancer deletion newborn mouse

| PRJNA667049 | ENA

ATAC-sequencing data for 923 enhancer deletion newborn mouse keratinocytes

Project description:We examined the ATAC-seq chromatin profiles of epidermis from newborn CRISPR-edited mice that have the 923 enhancer located within the Epidermial Differentiation Complex deleted. We examined two independent deletion lines, 923del and 923large, homozygous mutants, as well as wild type mice. We find overall there are not many differences in chromatin accessibility upon the loss of the 923 enhancer, though there are a few peaks of less accessible DNA within the EDC and more accessible DNA just outside the EDC.

2020-10-30 | GSE158868 | GEO

RNA-sequencing data for 923 enhancer deletion newborn mouse whole skin

Project description:We examined the RNA expression profiles of whole skin from newborn CRISPR-edited mice that have the 923 enhancer located within the Epidermial Differentiation Complex deleted. We examined two independent deletion lines, 923del and 923large, both homozygous mutants and heterozygotes, as well as wild type mice and involucrin Ivl knockout mice. We find that Ivl, the gene most proximal to 923, is downregulated upon the loss of the enhancer in both independent deletions, and 4 additional genes are also downregulated in both deletion lines, a secondary effect of the loss of Ivl, as concluded by comparing to the Ivl KO mice. We thus conclude that Ivl is the primary target gene of the 923 enhancer and establish a 923-Ivl regulatory module.

2020-10-30 | GSE158869 | GEO

RNA-sequencing data for 923 enhancer deletion newborn mouse whole skin

Project description:RNA-sequencing data for 923 enhancer deletion newborn mouse whole skin

| PRJNA667132 | ENA

923 enhancer deletion newborn mouse

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-10-30 | GSE158870 | GEO

Gene expression analysis of Ovol2-deficent newborn keratinocytes

Project description:We report the differential gene expression differences between control and Ovol2-deficent newborn keratinocytes

2018-11-06 | GSE118915 | GEO

Gene expression analysis of Ovol2-deficent newborn keratinocytes

Project description:Gene expression analysis of Ovol2-deficent newborn keratinocytes

| PRJNA487344 | ENA

Keratinocytes in embryos and newborns, and Notch1 expression in newborns

Project description:Comparison between pattern of gene expression in uncultured keratinocytes derived from the epidermis of embryonic mice (E15.5) versus newborn mice and comparison between pattern of gene expression in primary keratinocytes derived from newborn mice plus/minus activated Notch1 expression. Keywords = mouse Keywords = keratinocyte Keywords = skin Keywords = embryonic development. Keywords: other

2004-07-22 | GSE1569 | GEO

ChIP-seq analysis of genome wide Brg1 binding in mouse primary keratinocytes

Project description:We analyzed Brg1 binding genomeiwide in freshly isolated newborn mouse epidermal keratinocytes using ChIP-seq technology Mouse epidermal keratinocytes were isolated form the newborn C57Bl6 mice and Brg1 binding in their chromatin was analyzed using ChIP-seq technology on Hi-Seq 2500 machine

2013-11-01 | E-GEOD-50921 | biostudies-arrayexpress

p38a-dependent gene expression in keratinocytes

Project description:Gene expression in wild-type and p38a-knockout keratinocytes were compared. Keratinocytes were isolated from newborn mice, and left unirradiated (0 h) and irradiated (4 h) with ultraviolet-B (UVB). C57BL/6 wild-type mice, and keratinocyte-specific p38a-knockout mice on a C57BL/6 background were used for isolation of primary keratinocytes.

2014-01-01 | GSE51206 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data